View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15076_low_16 (Length: 284)
Name: NF15076_low_16
Description: NF15076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15076_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 19 - 279
Target Start/End: Complemental strand, 47211965 - 47211705
Alignment:
| Q |
19 |
gttattgcgcttgaggagatttctgaatggatgtttcacctctttagcaacacgacttgcttctactaactctaagaactcgggttcaatgttgtccgtg |
118 |
Q |
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| T |
47211965 |
gttattgcgcttgaggagatttctgaatggatgtttcacctctttagcaacacgacttgcttctactaactctaagaactcgggttcaatgttgtccgtg |
47211866 |
T |
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| Q |
119 |
ccacgaatctttctcagaacagcttttcctttgtccaagtgaccacgttcaatgagactatttggggtgtccactaccaagtaagcccctaaagtgagga |
218 |
Q |
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| T |
47211865 |
ccacgaatctttctcagaacagcttttcctttgtccaagtgaccacgttcaatgagactatttggggtgtccactaccaagtaagcccctaaagtgagga |
47211766 |
T |
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| Q |
219 |
gtaatgctgggatacctcccaatcccagagatatcctccaaccccaatgacctttgcttct |
279 |
Q |
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| T |
47211765 |
gtaatgctgggatacctcccaatcccagagatatcctccaaccccaatgacctttgattct |
47211705 |
T |
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Target: chr5 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 23 - 197
Target Start/End: Original strand, 749125 - 749299
Alignment:
| Q |
23 |
ttgcgcttgaggagatttctgaatggatgtttcacctctttagcaacacgacttgcttctactaa-ctctaagaactcgggttcaatgttgtccgtgcca |
121 |
Q |
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| T |
749125 |
ttgcgtttgagaagattcctaaaagggtgcttgacctctttagcaacacgacttgcctc-acaaagctccaagaactcgggttcaatgttgtcagtgcca |
749223 |
T |
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| Q |
122 |
cgaatctttctcagaacagcttttcctttgtccaagtgaccacgttcaatgagactatttggggtgtccactacca |
197 |
Q |
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| T |
749224 |
cgaatctttttaagtacagcttttccttcttcaaggcgaccacgctcaatgagactgttgggggtgtccacaacca |
749299 |
T |
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