View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15076_low_2 (Length: 538)
Name: NF15076_low_2
Description: NF15076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15076_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 459; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 18 - 533
Target Start/End: Complemental strand, 25930249 - 25929726
Alignment:
| Q |
18 |
aaacccgcccgttcatacctaacacaatgaagggaacccaaatgctgcaattaggcatctagaggtggacggaatttcgagattgactgtgttgttttta |
117 |
Q |
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| T |
25930249 |
aaacccgccccttcatacctaacacaatgaagggaacccaaatgctgcaattaggcatctagaggcggacggaatttcgagattgactgtgttgttttta |
25930150 |
T |
|
| Q |
118 |
tatttttcttctgggtctagctattagcagacaagcgttagttgcacttgcttatatt--------gaaggtagcaaaaccgatggttctcaactaaaca |
209 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||| ||||| |||||| |
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| T |
25930149 |
tatttttcttctgggtctagctattagcagacaagcattagtagcacttgcttatatttaggtattgaaggtagcaaaaccgatggtgctcaattaaaca |
25930050 |
T |
|
| Q |
210 |
acacagtgaaatgattgagaaaggagagaaaatgaagaatattataagtctgaatgcaacagtgatcctcagctattacaccagaatttcagaactaaaa |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25930049 |
acacagtgaaatgattgagaaaggagagaaaatgaagaatattataagtctgaatgcaacagtgatcctcagctattacaccagaatttcagaactaaaa |
25929950 |
T |
|
| Q |
310 |
gttttacagaaaatattatctctgtcaataagaacaaacaaatcatgagatgaagtcatgccccctccatcctctctaattggtctcaccgtacctgtaa |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
25929949 |
tttttacagaaaatattatctctgtcaataagaacaaacaaatcatgagatgaagtcatgccccctccatcctctctaattagtctcaccgtacctgtaa |
25929850 |
T |
|
| Q |
410 |
ataactgccacatcaacagtgctcttcctattattttattggctacttgattctcattgtttccatttttacctttagcccttcgccaaaaaactctcca |
509 |
Q |
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| T |
25929849 |
ataactgccacatcaacagtgctcttcctattattttattggctacttgattctcattgtttccatttttacctttagcccttcgccaaaaaactctcca |
25929750 |
T |
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| Q |
510 |
cactttttggtttccctttgcttc |
533 |
Q |
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|||||||||||||||||| ||||| |
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| T |
25929749 |
cactttttggtttcccttggcttc |
25929726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 37 - 95
Target Start/End: Complemental strand, 53789108 - 53789050
Alignment:
| Q |
37 |
taacacaatgaagggaacccaaatgctgcaattaggcatctagaggtggacggaatttc |
95 |
Q |
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|||||||||||||| |||||||||| |||||||||||| ||||||| ||||||||||| |
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| T |
53789108 |
taacacaatgaaggcaacccaaatggtgcaattaggcaactagaggcagacggaatttc |
53789050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 42 - 86
Target Start/End: Original strand, 30610948 - 30610992
Alignment:
| Q |
42 |
caatgaagggaacccaaatgctgcaattaggcatctagaggtgga |
86 |
Q |
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| T |
30610948 |
caatgaaggcaacccaaatgctgcaagtgggcagctagaggtgga |
30610992 |
T |
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