View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15076_low_20 (Length: 215)
Name: NF15076_low_20
Description: NF15076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15076_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 12 - 204
Target Start/End: Original strand, 54791634 - 54791826
Alignment:
| Q |
12 |
aacctggccaatgaaattgacattacaaatgaaaacctcaacaaaatgcagtataagtataatgagaagaccatgtccttaagtaggatgctggaggaga |
111 |
Q |
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| T |
54791634 |
aacctggccaatgaaattgacattacaaatgaaaacctcaacaaaatgcagtataagtataatgagaagaccatgtccttaagtaggatgctggaggaga |
54791733 |
T |
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| Q |
112 |
aagacaggcttcacaatgcttttgttgaaggtttgtataatgtctgttagaatctgattttgccttattgtatgtaaaggctgtgtgcttcat |
204 |
Q |
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| T |
54791734 |
aagacaggcttcacaatgcttttgttgaaggtttgtataatgtctgttagaatctgattttgccttattgtatgtaaaggctgtgtgcttcat |
54791826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 12 - 204
Target Start/End: Complemental strand, 54777512 - 54777320
Alignment:
| Q |
12 |
aacctggccaatgaaattgacattacaaatgaaaacctcaacaaaatgcagtataagtataatgagaagaccatgtccttaagtaggatgctggaggaga |
111 |
Q |
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| T |
54777512 |
aacctgaccaatgaaattgacattccaaatgaaaacctcaacataattcggtataagtataatgagaagaccatgtccttaagtaggatgctggaggaga |
54777413 |
T |
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| Q |
112 |
aagacaggcttcacaatgcttttgttgaaggtttgtataatgtctgttagaatctgattttgccttattgtatgtaaaggctgtgtgcttcat |
204 |
Q |
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| T |
54777412 |
atgacaggcttcacaatgcttttgttgaaggtttgtataatgtctgttagaatctgattttgccttattgtatgtaaaggctgtgtgcttcat |
54777320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 12 - 203
Target Start/End: Original strand, 52284292 - 52284483
Alignment:
| Q |
12 |
aacctggccaatgaaattgacattacaaatgaaaacctcaacaaaatgcagtataagtataatgagaagaccatgtccttaagtaggatgctggaggaga |
111 |
Q |
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| T |
52284292 |
aacctggctaatgaaattgatattacaaatgaaaacctcaacaaaatgcaatataagtataacgagaagaccatgtctttaagtaggatgctggaggaga |
52284391 |
T |
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| Q |
112 |
aagacaggcttcacaatgcttttgttgaaggtttgtataatgtctgttagaatctgattttgccttattgtatgtaaaggctgtgtgcttca |
203 |
Q |
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| T |
52284392 |
aagacaggcttcacaatgcttttgttgaaggtttgtataatttctgttagaatctgattttgtcttattgtatgtaaaggccgtgtgcttca |
52284483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 12 - 184
Target Start/End: Original strand, 799562 - 799734
Alignment:
| Q |
12 |
aacctggccaatgaaattgacattacaaatgaaaacctcaacaaaatgcagtataagtataatgagaagaccatgtccttaagtaggatgctggaggaga |
111 |
Q |
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|||||||| ||||| ||||| ||||| |||||||| |||||||| |||||||||| ||||||||||||||| |||||||| ||||||||||||||||||| |
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| T |
799562 |
aacctggcaaatgagattgatattactaatgaaaatctcaacaagatgcagtataggtataatgagaagactatgtccttgagtaggatgctggaggaga |
799661 |
T |
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| Q |
112 |
aagacaggcttcacaatgcttttgttgaaggtttgtataatgtctgttagaatctgattttgccttattgtat |
184 |
Q |
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| T |
799662 |
aagacaaacttcacagtgcttttgttgaaggtttgtataatttctgttataatctgattttgccttattgtat |
799734 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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