View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15076_low_23 (Length: 206)
Name: NF15076_low_23
Description: NF15076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15076_low_23 |
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Alignment Details
Target: chr6 (Bit Score: 175; Significance: 2e-94; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 14 - 192
Target Start/End: Complemental strand, 2125105 - 2124927
Alignment:
| Q |
14 |
caaaggaggagaaggaggtgatttcacaataggtggagttggtttcactagagggggagaaggtgccttaacaataggtggtgattgataaggtggtgat |
113 |
Q |
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| T |
2125105 |
caaaggaggagaaggaggtgatttcacaataggtggagttggtttcactagagggggagaaggtgccttaacaataggtggtgattgataaggtggtgat |
2125006 |
T |
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| Q |
114 |
tttaccaatggtggagaaggaggtgatttcacaattggtggtgttggtttcactggtggtgattgatatggtggtgttt |
192 |
Q |
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| T |
2125005 |
tttaccaatggtggagaaggaggtgatttcacaataggtggtgttggtttcactggtggtgattgatatggtggtgttt |
2124927 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 75 - 167
Target Start/End: Complemental strand, 2125149 - 2125057
Alignment:
| Q |
75 |
ggtgccttaacaataggtggtgattgataaggtggtgattttaccaatggtggagaaggaggtgatttcacaattggtggtgttggtttcact |
167 |
Q |
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| T |
2125149 |
ggtgccttcactataggtggtgattgataaggtggtgttttcaccaaaggaggagaaggaggtgatttcacaataggtggagttggtttcact |
2125057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 90 - 156
Target Start/End: Complemental strand, 2124951 - 2124888
Alignment:
| Q |
90 |
ggtggtgattgataaggtggtgattttaccaatggtggagaaggaggtgatttcacaattggtggtg |
156 |
Q |
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| T |
2124951 |
ggtggtgattgatatggtggtgttttcaccaatggtggaga---aggtgctttcacaataggtggtg |
2124888 |
T |
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