View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15076_low_3 (Length: 536)
Name: NF15076_low_3
Description: NF15076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15076_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 476; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 1 - 519
Target Start/End: Original strand, 42760284 - 42760803
Alignment:
| Q |
1 |
ctatagtggattattggaaaaatttgctctatgccccaatctttatcctcttattcttacatattttatgtagactatctattttaccctcatatgtaaa |
100 |
Q |
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| T |
42760284 |
ctatagtggattattggaaaaatttgctctatgccccaatctttatcctcttattcttacgtattttatgtagactatccattttaccctcatatgtaaa |
42760383 |
T |
|
| Q |
101 |
tttaaacatctcattttgtttttcatatttcatcaaatttttcatgaggttcttcaaaacaaaaattgtaagtttattcgttttccattatgagatataa |
200 |
Q |
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| T |
42760384 |
tttaaacatctcattttgtttttcatatttcatcaaatttttcatgaggttcttaaaaacaaaaatcgtaagtttattcgttttccattatgagatataa |
42760483 |
T |
|
| Q |
201 |
actgggaggaagattaccatgatcattttttgaactagttcacaaatgtcaaccattaactcttcaagattatatgtgagtagtttagaaccaaacaatt |
300 |
Q |
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| T |
42760484 |
actgggaggaagattaccatgatcattttttgaactagttcacaaatgtcaaccataaactcttcaagattatatgtgaatagtttagaaccaaacaatt |
42760583 |
T |
|
| Q |
301 |
tcttctcttccaacaaacataattctaaa-ttttgatcaacttcgaaaaacattgtatctcttttctagaacctctcacttctaattggtgcatactctc |
399 |
Q |
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| T |
42760584 |
tcttctcttccaacaaacataattctaaatttttgatcaacttcgaaaaacattgcatctcttttctagaacctctcacttctaattggtgcatactctc |
42760683 |
T |
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| Q |
400 |
ttgcttatttgtgcaacacgagtgacattatccttgtctggcttgtctcggtctttcaacaacaaaagcacgtgtcttattgaaacatatatcggttttg |
499 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |
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| T |
42760684 |
ttgcttatttgtgcaacacgagtgacattatccttgtctggcttgtctcggtctttcaacaacaaaagcatgtgtcttagtgaaacatatatcggttttg |
42760783 |
T |
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| Q |
500 |
ctaaatcttcaacattcttc |
519 |
Q |
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| T |
42760784 |
ctaaatcttcaacattcttc |
42760803 |
T |
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