View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15076_low_4 (Length: 535)
Name: NF15076_low_4
Description: NF15076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15076_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 479; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 18 - 525
Target Start/End: Original strand, 43357052 - 43357555
Alignment:
| Q |
18 |
atcatcagatgcatcaccatctacctcgcttgacgagtcggagtctgagtagttctcaaaagaatgttcctcatgagtagggacatcagaatatccttca |
117 |
Q |
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| T |
43357052 |
atcatcagatgcatcaccatctacctcgcttgacgagtcggagtctgagtagttctcaaaagaatgttcctcatgagtagggacatcagaatatccttca |
43357151 |
T |
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| Q |
118 |
cctggtacaaagaatgcagaattacatctgttagtgttgccttttgtattctctagcacattgaaattcatggggtagatgttgcattgttcttgtttag |
217 |
Q |
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| T |
43357152 |
cctggtacaaagaatacagaattacatctgttagtgttgccttttgtattctctagcacattgaaattcatggggtagatgttgtattgttcttgtttag |
43357251 |
T |
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| Q |
218 |
caaaggtttgcagttgctgcagttcctttgagttttctctgacatccattgttgatgttgaatgaggaggaacattacacaaaggtgtttatatatacga |
317 |
Q |
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| T |
43357252 |
caaaggtttgcagttgctgcagttcctttgagttttctctgacatccattgttgatgttgaatgaggaggaacattacacaaaggtgtttatatatacga |
43357351 |
T |
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| Q |
318 |
ggattgagtgcagtactggtcctgaaatgtcataatgaggaccgttataaaacgaagaaaacgtagaaagcaaaagttatgaggtaattatgataataat |
417 |
Q |
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| T |
43357352 |
ggattgagtgcagtactggtcctgaaatgtcataatgaggaccgttataaaacgaagaaaacgtagaaagcaaaagttatgaggtaattatgataataat |
43357451 |
T |
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| Q |
418 |
tcaattggaccctggttttggaaatttgagtaaggtcgcatccttcttttgaagtgtttgttattatggccccatgacactgctgttttactatatttga |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
43357452 |
tcaattggaccctggttttggaaatttgagtaaggtcgcatccttcttttgaag----tgttattatggccccatgacactgctgttttactatatttga |
43357547 |
T |
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| Q |
518 |
cctctgtg |
525 |
Q |
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| T |
43357548 |
cttctgtg |
43357555 |
T |
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