View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15076_low_5 (Length: 526)
Name: NF15076_low_5
Description: NF15076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15076_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 1 - 522
Target Start/End: Complemental strand, 41336967 - 41336436
Alignment:
| Q |
1 |
agacgactctcatgataacaccaagcttttatcaatataacactgcgcttgaatatatgattccgacttatcaaataatcaacctgcaataatcgattat |
100 |
Q |
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| T |
41336967 |
agacgactctcatggtaacaccaagcttttatcaatataacactgcgcttgaatatatgattccgacttatcaaataatcaacctgcaataatcgattat |
41336868 |
T |
|
| Q |
101 |
tttttagagatcttgcaaaatnnnnnnntatgcttgaaatcacaacttactataataaatattacctcgtccaaaaaacaaagtgagcataaaccactca |
200 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41336867 |
tttttagagatcttgcaaaataaaaaaatatgcttgaaatcacaacttactataataaatattacctcgtccaaaaaacaaagtgagcataaaccactca |
41336768 |
T |
|
| Q |
201 |
attggttgaaagatatgtcaattacaaatttttcaaccaagcacttaatgatcttcacctggcattgaacaacaaaaaacacgcgaaggttgaaaaatat |
300 |
Q |
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| T |
41336767 |
attggttgaaagatatgtcaattacaaatttttcaaccaagcacttaatgatcttcacctggcattgaacaacaaaaaacacgcgaaggttgaaaaatat |
41336668 |
T |
|
| Q |
301 |
ttttatcacggnnnnnnnnatcaattatcgaaacaacttttatatttggatactcataaatactatacacgcattattt----------tctctgttcct |
390 |
Q |
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| T |
41336667 |
ttttatcacgtttttttttatcaattatcggaacaacttttatatttggatactcataaatactatacacgcattattttctctctatctctctgttcct |
41336568 |
T |
|
| Q |
391 |
attacatttatcacatcacttaaacaaattgtatatgaaaatgcattgcattggataagnnnnnnntacctctgcattgacaagctgaacctcgttaacc |
490 |
Q |
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| T |
41336567 |
atcacatttatcacatcacttaaacaaattgtatatgaaaatgcattgcattggataagaaaaaaatacctctgcattgacaagctgaacctctttaacc |
41336468 |
T |
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| Q |
491 |
ctaaatttagaaaactcgttgttcatctcact |
522 |
Q |
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| T |
41336467 |
ctaaatttagaaaactcgttgttcatttcact |
41336436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 181; Significance: 1e-97; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 1 - 308
Target Start/End: Complemental strand, 36135535 - 36135224
Alignment:
| Q |
1 |
agacgactctcatgataacaccaagcttttatcaatataacactgcgcttgaatatatgattccgacttatcaaataatcaacctgcaataatcgattat |
100 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| || ||||| | ||||| |
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| T |
36135535 |
agacgactctcatggtaacaccaagcttttatcaatataacaatgcgcttgaatatatgattccgacttatcaaatgatcaacttgaaataaccaattat |
36135436 |
T |
|
| Q |
101 |
tttttagagatcttgcaaaatnnnnnnntatgcttgaaa-tcacaacttactataataa-atattacctcgtccaaaaaacaaagtgagcataaaccact |
198 |
Q |
| |
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| T |
36135435 |
ttttaagagatcttgcaaaataaaaaa-tatggttgaaaatcacaacttcccataataatatattacctcctccaaaaaacaaagtgagcataaaccact |
36135337 |
T |
|
| Q |
199 |
caattggttgaaagatatgtcaattacaaatttttcaaccaagcacttaatgatcttcacctggcattgaac---aacaaaaaacacgcgaaggttgaaa |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||| || || ||||||||||||||||| | |
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| T |
36135336 |
caattggttgaaagatatgtcaattacaaatttttcaaccaaacacttaatgatcttcacttgccattgaacaagaagaagaaacacgcgaaggttgaga |
36135237 |
T |
|
| Q |
296 |
aatatttttatca |
308 |
Q |
| |
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|||| |||||||| |
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| T |
36135236 |
aatacttttatca |
36135224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 331 - 367
Target Start/End: Complemental strand, 36135216 - 36135180
Alignment:
| Q |
331 |
aaacaacttttatatttggatactcataaatactata |
367 |
Q |
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|||||||||||||||||||| |||||||||| ||||| |
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| T |
36135216 |
aaacaacttttatatttggacactcataaattctata |
36135180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 16 - 62
Target Start/End: Original strand, 10136083 - 10136129
Alignment:
| Q |
16 |
taacaccaagcttttatcaatataacactgcgcttgaatatatgatt |
62 |
Q |
| |
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| T |
10136083 |
taacaccaagcttttatcaatataatgctacgcttgaataaatgatt |
10136129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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