View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15076_low_6 (Length: 507)
Name: NF15076_low_6
Description: NF15076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15076_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 149; Significance: 2e-78; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 166 - 405
Target Start/End: Complemental strand, 41547531 - 41547293
Alignment:
| Q |
166 |
taatctcaaaccccaaagataaacccaacaacagnnnnnnnnnctctctttcaacaaaacaaacnnnnnnnnnngttagcatattttaaggaaacaaatc |
265 |
Q |
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| T |
41547531 |
taatctcaaaccccaaagataaacccaacaacagtttttttttctctctttcaacaaaacaaacaaaaaaaaa-gttagcatattttaaggaaacaaatc |
41547433 |
T |
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| Q |
266 |
aaacccatcaaagattcagcnnnnnnntcacctttccccacagaattatcttcaaagatcaaatctttaacaccaaatgaattgaaatttcggcaaattc |
365 |
Q |
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|||||||||||||||||| | |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41547432 |
aaacccatcaaagattcaacaaaaaaatcacctttccccacagtattatcttcaaagatcaaatctttaacaccaaatgaattgaaatttcggcaaattc |
41547333 |
T |
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| Q |
366 |
atgcaaaatgtgagatcggggtatattcggattccatcac |
405 |
Q |
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| T |
41547332 |
atgcaaaatgtgagatcggggtatattcggattccatcac |
41547293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 33 - 65
Target Start/End: Complemental strand, 41547664 - 41547632
Alignment:
| Q |
33 |
aaacaactcacgaattgtgtaaacagtgttccg |
65 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
41547664 |
aaacaactcacgaattgtgtaaacagtgttccg |
41547632 |
T |
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