View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15077_high_6 (Length: 234)
Name: NF15077_high_6
Description: NF15077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15077_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 180; Significance: 2e-97; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 1717565 - 1717784
Alignment:
| Q |
1 |
tattcctcctaaactttttctatgactgtatctgtaaacaagttcaattcatgtataaagaaatcagcttcgagtaggtaattcaattggttaacaaagt |
100 |
Q |
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| T |
1717565 |
tattcctcctaaactttttctatgactgtatctgtaaacaagttcaattcatgtataaagaaatcagtttcgagtaggtaattcatttggttaacaaagt |
1717664 |
T |
|
| Q |
101 |
tttaaataaggagagtgaatcttagagaaagttctagtaagagtgttcctagcattctgtctaaggaggaatgccatgtacactctctaacatctactct |
200 |
Q |
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|||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| ||||| ||||||| |||||||| || ||| | |
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| T |
1717665 |
tttaaataaggagagtgaatcttagagaaagtgccagtaagagtgttcctagcattctgtctaaggagaaatgctatgtacattctctaacgtccacttt |
1717764 |
T |
|
| Q |
201 |
cttatttagtgaaattcatg |
220 |
Q |
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|||||||||||||||||||| |
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| T |
1717765 |
cttatttagtgaaattcatg |
1717784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 1739062 - 1739164
Alignment:
| Q |
1 |
tattcctcctaaactttttctatgactgtatctgtaaacaagttcaattcatgtataaagaaatcagcttcgagtaggtaattcaattggttaacaaagt |
100 |
Q |
| |
|
||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||| ||| |||| |
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| T |
1739062 |
tattcctcctaaactttttctattattatatctgtaaacaagttcaattcatgtataaagatatcagtttcgagtaggtaattcatttggtgaactaagt |
1739161 |
T |
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| Q |
101 |
ttt |
103 |
Q |
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||| |
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| T |
1739162 |
ttt |
1739164 |
T |
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