View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15077_low_2 (Length: 533)
Name: NF15077_low_2
Description: NF15077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15077_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 70 - 270
Target Start/End: Complemental strand, 48814293 - 48814093
Alignment:
| Q |
70 |
gcaggtttattttgcgagttgatttttgctttactgactaccgtgccttcgtgttgctactattccttgataaactgcactatttgtttttatggttgag |
169 |
Q |
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| T |
48814293 |
gcaggtttattttgcgagttgatttttgctttactgactaccgtgccttcgtgttgctactattccttgataaactgcactatttgtttttatggttgag |
48814194 |
T |
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| Q |
170 |
catgatctactaaagtggaaagttatgatattgtcatgattatcgattgagcaactataggaaagtttgtaaatacaacttacaaatgttagaacatggt |
269 |
Q |
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| T |
48814193 |
catgatctactaaagtggaaagttatgatattgtcatgattatcgattgagcaactataggaaagtttgtaaatacaacttacagatgttagaacatggt |
48814094 |
T |
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| Q |
270 |
g |
270 |
Q |
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| T |
48814093 |
g |
48814093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 134 - 279
Target Start/End: Complemental strand, 48797540 - 48797378
Alignment:
| Q |
134 |
ccttgataaactgcactatttgtttttatggttgagcatgatctacta---aagtggaaagttatgatattgtcatgatt---atcgattgagcaactat |
227 |
Q |
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| T |
48797540 |
ccttgataaactgcactatctgtttttattgttgggagtgatctactactaaagtggaaaggtatgatattgacatgattatgatcggttgagcaaccat |
48797441 |
T |
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| Q |
228 |
agg-----aaagtttgtaaa------tacaacttacaaatgttagaacatggtgctttcaatt |
279 |
Q |
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| T |
48797440 |
aggaaattaaagtttgtaaatactactacaacttacaaatgttagaacatggtgcattcaatt |
48797378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 370 - 399
Target Start/End: Original strand, 31676660 - 31676689
Alignment:
| Q |
370 |
acaaacattggctacacatttagtttgtta |
399 |
Q |
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| T |
31676660 |
acaaacattggctacacatttagtttgtta |
31676689 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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