View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15077_low_3 (Length: 423)
Name: NF15077_low_3
Description: NF15077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15077_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 378; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 1 - 409
Target Start/End: Original strand, 45307366 - 45307767
Alignment:
| Q |
1 |
tgaaataagcagcagtaacaatctaatgggaggaggaggagttactggaaacaactctgagagcagttcaagtgatgaagatcaatcatgcaagaaacca |
100 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45307366 |
tgaaataagcagcagtaacaatctaatgggag---gaggagttactggaaacaactctgagagcagttcaagtgatgaagatcaatcatgcaagaaacca |
45307462 |
T |
|
| Q |
101 |
aggcaaatagtagaaacttgcattaaggctaaagtttcaagagtttatttcaagacagaatcatctgattcaagccttgtaagaatattcattcctcttc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45307463 |
aggcaaatagtagaaacttgcattaaggctaaagtttcaagagtttatttcaagacagaatcatctgattcaagccttgtaagaatattcattcctcttc |
45307562 |
T |
|
| Q |
201 |
attaatttgcaaagccaacaatatatataagtgatttttgtttgacattttttgtgttaattaattttcagattgtgaaagatggatatcagtggagaaa |
300 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45307563 |
attaatttgcaaagccaaca----atataagtgatttttgtttgacattttttgtgttaattaattttcagattgtgaaagatggatatcagtggagaaa |
45307658 |
T |
|
| Q |
301 |
atatggacaaaaggtgacaagggataatccatctccaagagcatacttcaaatgctcatttgctccaagctgcacagtgaagaagaaagtgcaaagaagt |
400 |
Q |
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| T |
45307659 |
atatggacaaaaggtgacaagggataatccatctccaagagcatacttcaaatgctcatttgctccaagctgcacagtgaagaagaaagtgcaaagaagt |
45307758 |
T |
|
| Q |
401 |
gttgatgat |
409 |
Q |
| |
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||||||||| |
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| T |
45307759 |
gttgatgat |
45307767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 35 - 81
Target Start/End: Original strand, 45311097 - 45311143
Alignment:
| Q |
35 |
ggaggagttactggaaacaactctgagagcagttcaagtgatgaaga |
81 |
Q |
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| T |
45311097 |
ggaggagttaatggaaacaactctgagagtagttcaaatgatgaaga |
45311143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 265 - 373
Target Start/End: Original strand, 928311 - 928419
Alignment:
| Q |
265 |
ttttcagattgtgaaagatggatatcagtggagaaaatatggacaaaaggtgacaagggataatccatctccaagagcatacttcaaatgctcatttgct |
364 |
Q |
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||||||||||||||| |||||||| || ||||| |||||||||||||| ||||| || ||||| || | ||||||||| || ||||||||||| |||||| |
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| T |
928311 |
ttttcagattgtgaaggatggataccattggaggaaatatggacaaaaagtgaccagagataacccttgtccaagagcttatttcaaatgctcttttgct |
928410 |
T |
|
| Q |
365 |
ccaagctgc |
373 |
Q |
| |
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||||||||| |
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| T |
928411 |
ccaagctgc |
928419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 274 - 387
Target Start/End: Complemental strand, 48925973 - 48925860
Alignment:
| Q |
274 |
tgtgaaagatggatatcagtggagaaaatatggacaaaaggtgacaagggataatccatctccaagagcatacttcaaatgctcatttgctccaagctgc |
373 |
Q |
| |
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|||||| |||||||||||||||||||||||||| || || || || || ||||| || ||||| || || |||||||| || || |||||||| ||||| |
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| T |
48925973 |
tgtgaaggatggatatcagtggagaaaatatggtcagaaagtcactagagataacccctctcctagggcttacttcaagtgttcctttgctcctggctgc |
48925874 |
T |
|
| Q |
374 |
acagtgaagaagaa |
387 |
Q |
| |
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| T |
48925873 |
cctgtgaagaagaa |
48925860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 281 - 387
Target Start/End: Complemental strand, 3259078 - 3258972
Alignment:
| Q |
281 |
gatggatatcagtggagaaaatatggacaaaaggtgacaagggataatccatctccaagagcatacttcaaatgctcatttgctccaagctgcacagtga |
380 |
Q |
| |
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||||||||||| ||||| |||||||| || ||||| || || ||||| || ||||| ||||| || || | ||||||| ||||||||||||| |||| | |
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| T |
3259078 |
gatggatatcaatggaggaaatatggtcagaaggttactagagataacccctctcctagagcttattttaggtgctcatatgctccaagctgcccagtta |
3258979 |
T |
|
| Q |
381 |
agaagaa |
387 |
Q |
| |
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| ||||| |
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|
| T |
3258978 |
aaaagaa |
3258972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 35 - 81
Target Start/End: Complemental strand, 16797713 - 16797667
Alignment:
| Q |
35 |
ggaggagttactggaaacaactctgagagcagttcaagtgatgaaga |
81 |
Q |
| |
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|||||||||| |||||||||||||||||| ||||||| |||||||| |
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| T |
16797713 |
ggaggagttaatggaaacaactctgagagtagttcaaacgatgaaga |
16797667 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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