View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15077_low_5 (Length: 353)
Name: NF15077_low_5
Description: NF15077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15077_low_5 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 1 - 353
Target Start/End: Original strand, 34241495 - 34241847
Alignment:
| Q |
1 |
atttttaagacatgcaagagggagtcaaaatgccggaataaagttggcacgtgacaataaggcatcgaatatcgaacttgagaagatagatattcccatt |
100 |
Q |
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| T |
34241495 |
atttttaagacatgcaagagggagtcaaaatgccggactaaagttggcacttgacaataaggcatcgaatatcgtacttgagaagatagatattcccatt |
34241594 |
T |
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| Q |
101 |
acagccaagagatagagaaaagaagcaaataccgaggttagaccatgcatagctgcaacccttgtcacaggcaacagcagctttgaggtatttttgtgat |
200 |
Q |
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| T |
34241595 |
acagccaagagatagagaaaagaagcaaataccgaggttagaccatgcatagctgcaacccttgtcacaggcaacagcagctttgaggtatttttgtgat |
34241694 |
T |
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| Q |
201 |
gttttgaattccctagcacaaagactgtgaaggccaagttggtgccactgaactgcatcatctggatcttccgctatggcctagtagaaaaagaatgata |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34241695 |
gttttgaattccctagcacaaagactgtgaaggccaagttggtgccactgaactgcatcatctggatcttccgctatggcctagtagaaaaagaatgata |
34241794 |
T |
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| Q |
301 |
caccaaacaacgatgtgagatagtaaatccaacagagacaccaaacatttaac |
353 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34241795 |
caccaaacaacgatgtgagatagtaaatccaacagagacaccaaacatttaac |
34241847 |
T |
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