View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15077_low_6 (Length: 259)

Name: NF15077_low_6
Description: NF15077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15077_low_6
NF15077_low_6
[»] chr4 (5 HSPs)
chr4 (35-251)||(48524310-48524526)
chr4 (36-96)||(52370448-52370508)
chr4 (138-197)||(39279911-39279970)
chr4 (35-68)||(35808587-35808620)
chr4 (35-96)||(55090752-55090812)
[»] chr5 (2 HSPs)
chr5 (35-97)||(16801997-16802059)
chr5 (35-68)||(6102827-6102860)
[»] chr3 (1 HSPs)
chr3 (131-216)||(39358223-39358308)
[»] chr2 (1 HSPs)
chr2 (35-99)||(35710820-35710884)
[»] chr7 (1 HSPs)
chr7 (35-102)||(48856276-48856343)


Alignment Details
Target: chr4 (Bit Score: 181; Significance: 7e-98; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 35 - 251
Target Start/End: Complemental strand, 48524526 - 48524310
Alignment:
Q  35 ataaaaagttatttattttggttgcttaaccaatatcctcatagcaatgtttaacattctccataaataaatgttgctatgttgtacctccctttgaaca 134  Q
    ||||||||||| || |||||||||||||| ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  48524526 ataaaaagttacttgttttggttgcttaatcaatatcctgagagcaatgtttaacattctccataaataaatgttgctatgttgtacctcccttggaaca 48524427  T
Q  135 gagatattatcaacctcctcctcattgtttaatacatttcccacaaactcataaattgtaactcttttagaccttagtatattctaatatagagaaaatt 234  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  48524426 gagatattatcaacctcctcctcattgtttaatacatttcccacaaactcataaattttaactcttttagaccttagtatattctaatatagagaaaatt 48524327  T
Q  235 tccaacaaaagtattat 251  Q
    ||| |||||||| ||||    
T  48524326 tcccacaaaagttttat 48524310  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 96
Target Start/End: Original strand, 52370448 - 52370508
Alignment:
Q  36 taaaaagttatttattttggttgcttaaccaatatcctcatagcaatgtttaacattctcc 96  Q
    |||||| |||||||||||  |||||||||||||||||| ||| || || ||||||||||||    
T  52370448 taaaaacttatttattttaattgcttaaccaatatccttatatcagtggttaacattctcc 52370508  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 138 - 197
Target Start/End: Original strand, 39279911 - 39279970
Alignment:
Q  138 atattatcaacctcctcctcattgtttaatacatttcccacaaactcataaattgtaact 197  Q
    ||||||| |||||| ||||||| |||||| |||| ||||||||||||| || ||||||||    
T  39279911 atattatgaacctcttcctcatggtttaaaacatatcccacaaactcacaagttgtaact 39279970  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 68
Target Start/End: Original strand, 35808587 - 35808620
Alignment:
Q  35 ataaaaagttatttattttggttgcttaaccaat 68  Q
    ||||||||||| ||||||||||||||||||||||    
T  35808587 ataaaaagttacttattttggttgcttaaccaat 35808620  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 96
Target Start/End: Complemental strand, 55090812 - 55090752
Alignment:
Q  35 ataaaaagttatttattttggttgcttaaccaatatcctcatagcaatgtttaacattctcc 96  Q
    ||||||||||| || |||| ||||||||||||||||||| | | || |||||||||||||||    
T  55090812 ataaaaagttacttgttttagttgcttaaccaatatcctaaga-cactgtttaacattctcc 55090752  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 35 - 97
Target Start/End: Complemental strand, 16802059 - 16801997
Alignment:
Q  35 ataaaaagttatttattttggttgcttaaccaatatcctcatagcaatgtttaacattctcca 97  Q
    |||||||||||||| |||||||||||||||||||| ||| |  ||| ||||||||||||||||    
T  16802059 ataaaaagttatttgttttggttgcttaaccaataccctgagggcactgtttaacattctcca 16801997  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 68
Target Start/End: Complemental strand, 6102860 - 6102827
Alignment:
Q  35 ataaaaagttatttattttggttgcttaaccaat 68  Q
    ||||||||||| ||||||||||||||||||||||    
T  6102860 ataaaaagttacttattttggttgcttaaccaat 6102827  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 131 - 216
Target Start/End: Complemental strand, 39358308 - 39358223
Alignment:
Q  131 aacagagatattatcaacctcctcctcattgtttaatacatttcccacaaactcataaattgtaactcttttagaccttagtatat 216  Q
    |||||||| ||||  ||| || ||||||| |||||| |||||||||||||||||| || ||||||||  ||||||||||| |||||    
T  39358308 aacagagacattagaaacttcttcctcatggtttaaaacatttcccacaaactcacaatttgtaactgctttagaccttattatat 39358223  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 35 - 99
Target Start/End: Original strand, 35710820 - 35710884
Alignment:
Q  35 ataaaaagttatttattttggttgcttaaccaatatcctcatagcaatgtttaacattctccata 99  Q
    |||||||||||||||||||| |||||||||||||||| | | | || |||||| |||||||||||    
T  35710820 ataaaaagttatttattttgcttgcttaaccaatatcatgagatcattgtttagcattctccata 35710884  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 35 - 102
Target Start/End: Original strand, 48856276 - 48856343
Alignment:
Q  35 ataaaaagttatttattttggttgcttaaccaatatcctcatagcaatgtttaacattctccataaat 102  Q
    ||||||| |||||| ||||  |||||||| ||||||||| | | || |||||||||||||||||||||    
T  48856276 ataaaaaattatttgtttttattgcttaatcaatatcctaagaacactgtttaacattctccataaat 48856343  T

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