View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15078_high_6 (Length: 269)

Name: NF15078_high_6
Description: NF15078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15078_high_6
NF15078_high_6
[»] chr4 (3 HSPs)
chr4 (3-260)||(50071840-50072108)
chr4 (150-231)||(12007489-12007570)
chr4 (128-224)||(50071286-50071382)
[»] chr5 (2 HSPs)
chr5 (1-260)||(17115706-17115976)
chr5 (152-212)||(29108704-29108764)
[»] chr7 (2 HSPs)
chr7 (132-210)||(4833156-4833234)
chr7 (150-231)||(35264575-35264656)
[»] chr1 (4 HSPs)
chr1 (128-253)||(25476034-25476159)
chr1 (150-231)||(44634034-44634115)
chr1 (177-253)||(48621868-48621944)
chr1 (161-210)||(27573592-27573641)
[»] chr8 (6 HSPs)
chr8 (152-231)||(13231823-13231902)
chr8 (128-229)||(278966-279067)
chr8 (128-229)||(636785-636886)
chr8 (128-229)||(822588-822689)
chr8 (158-229)||(35593-35664)
chr8 (160-231)||(2623231-2623302)
[»] chr2 (5 HSPs)
chr2 (7-60)||(27060600-27060653)
chr2 (158-254)||(38356849-38356945)
chr2 (128-231)||(35063642-35063745)
chr2 (172-231)||(40056348-40056407)
chr2 (166-231)||(35064405-35064470)
[»] chr3 (1 HSPs)
chr3 (128-220)||(45004751-45004843)


Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 3 - 260
Target Start/End: Original strand, 50071840 - 50072108
Alignment:
Q  3 tgtgtttattgatggaaaggacgaagccgtgaaagcaacaactaaggtttgttttcgccgccatcagctgtgtgttttctgtttgacgatcaccgggaag 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||  ||||| ||| |    
T  50071840 tgtgtttattgatggaaaggacgaagccgtgaaagcaacaactaaggtttgttttcgacgccatcagctgtgtgttttctgtttgacagtcacctggagg 50071939  T
Q  103 ttcatgaaacggatattgaaaggacaaaattaacgg-----------cgttaatatggaagggagatgtttgtatatttgatgagaacttaagggtggtt 191  Q
    ||||||||||||||||||||||||||||||||||||            ||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  50071940 ttcatgaaacggatattgaaaggacaaaattaacggaaaattaacattgttaatatggaagggagatgtttgtatatttgatgagaacttaagggaggtt 50072039  T
Q  192 tgtgcaagttttaaaactaaatggggtgttagtgtcatttcaacgtaactcaggggaggtgagaataat 260  Q
    |||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||    
T  50072040 tgtgtaagttttaaaactaaagggggtgttagtgtcatttcaacgtaactcaggggaggtgagagtaat 50072108  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 150 - 231
Target Start/End: Complemental strand, 12007570 - 12007489
Alignment:
Q  150 aagggagatgtttgtatatttgatgagaacttaagggtggtttgtgcaagttttaaaactaaatggggtgttagtgtcattt 231  Q
    ||||||| ||||||| ||||||||||||||||||| | ||||  || | |||||||||||| | ||||||| ||||||||||    
T  12007570 aagggaggtgtttgtgtatttgatgagaacttaagtgaggttaatgtatgttttaaaactagagggggtgtcagtgtcattt 12007489  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 224
Target Start/End: Complemental strand, 50071382 - 50071286
Alignment:
Q  128 aaaattaacggcgttaatatggaagggagatgtttgtatatttgatgagaacttaagggtggtttgtgcaagttttaaaactaaatggggtgttagt 224  Q
    |||| |||||| ||||||| | ||||||  ||||||| |||||||||| | |||||||| |||| |||  | ||||||||||| | ||| |||||||    
T  50071382 aaaactaacggtgttaataagtaagggaagtgtttgtgtatttgatgaaagcttaagggaggttagtgttaattttaaaactagaagggatgttagt 50071286  T

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Target: chr5 (Bit Score: 169; Significance: 1e-90; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 17115976 - 17115706
Alignment:
Q  1 tatgtgtttattgatggaaaggacgaagccgtgaaagcaacaactaaggtttgttttcgccgccatcagctgtgtgttttctgtttgacgatcaccggga 100  Q
    ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  17115976 tatgtgtttattgatggaaagaacgaagtcgtgaaagcaacaactaaggtttgttttcgccgccatcagctgtgtgttttctgtttgacggtcactggga 17115877  T
Q  101 agttcatgaaacggatattgaaaggacaaaattaacgg-----------cgttaatatggaagggagatgtttgtatatttgatgagaacttaagggtgg 189  Q
     ||||| |||||||||||||||||||||||||||||||            ||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  17115876 ggttcacgaaacggatattgaaaggacaaaattaacggaaaattaacattgttaatatggaagggagatgtttgtatatttgatgagaacttaagggagg 17115777  T
Q  190 tttgtgcaagttttaaaactaaatggggtgttagtgtcatttcaacgtaactcaggggaggtgagaataat 260  Q
    || ||| |||||||||||||| |   ||||||||||||||||||||||||||||| |||||||||| ||||    
T  17115776 ttggtgtaagttttaaaactagagttggtgttagtgtcatttcaacgtaactcagaggaggtgagagtaat 17115706  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 152 - 212
Target Start/End: Original strand, 29108704 - 29108764
Alignment:
Q  152 gggagatgtttgtatatttgatgagaacttaagggtggtttgtgcaagttttaaaactaaa 212  Q
    ||||| |||||||||||||| | | |||| ||||| |||| ||| ||||||||||||||||    
T  29108704 gggaggtgtttgtatatttgttaaaaactcaagggaggttagtgtaagttttaaaactaaa 29108764  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 132 - 210
Target Start/End: Original strand, 4833156 - 4833234
Alignment:
Q  132 ttaacggcgttaatatggaagggagatgtttgtatatttgatgagaacttaagggtggtttgtgcaagttttaaaacta 210  Q
    ||||||| |||||||||||||| ||  ||||||||||||||| | |||||||||  |||| ||| ||||||||||||||    
T  4833156 ttaacggtgttaatatggaaggaagtcgtttgtatatttgattaaaacttaaggaaggttagtgtaagttttaaaacta 4833234  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 150 - 231
Target Start/End: Original strand, 35264575 - 35264656
Alignment:
Q  150 aagggagatgtttgtatatttgatgagaacttaagggtggtttgtgcaagttttaaaactaaatggggtgttagtgtcattt 231  Q
    ||||||| ||||||||||||||| || |||||||||| ||||||||||  | | |||| |||  ||||||||||||| ||||    
T  35264575 aagggaggtgtttgtatatttgaggaaaacttaagggaggtttgtgcatttgtgaaaattaatgggggtgttagtgttattt 35264656  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 128 - 253
Target Start/End: Original strand, 25476034 - 25476159
Alignment:
Q  128 aaaattaacggcgttaatatggaagggagatgtttgtatatttgatgagaacttaagggtggtttgtgcaagttttaaaactaaatggggtgttagtgtc 227  Q
    ||||||||||| |||||||   ||||||| ||||||| ||||| || | ||||| |||| |||| ||| |||||||||||||| | || |||| ||||||    
T  25476034 aaaattaacggtgttaatagataagggaggtgtttgtttatttcataaaaacttgagggaggttcgtgtaagttttaaaactagagggagtgtcagtgtc 25476133  T
Q  228 atttcaacgtaactcaggggaggtga 253  Q
    |||| ||   | ||||||||||||||    
T  25476134 attttaataaacctcaggggaggtga 25476159  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 150 - 231
Target Start/End: Original strand, 44634034 - 44634115
Alignment:
Q  150 aagggagatgtttgtatatttgatgagaacttaagggtggtttgtgcaagttttaaaactaaatggggtgttagtgtcattt 231  Q
    ||||||| || |||||||||||||||||||||||||| |||| ||    |||||||||||| | ||||||| | ||||||||    
T  44634034 aagggaggtgattgtatatttgatgagaacttaagggaggttggtatttgttttaaaactagagggggtgtcaatgtcattt 44634115  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 177 - 253
Target Start/End: Original strand, 48621868 - 48621944
Alignment:
Q  177 aacttaagggtggtttgtgcaagttttaaaactaaatggggtgttagtgtcatttcaacgtaactcaggggaggtga 253  Q
    |||||||||| |||| ||| | ||||| |||||||| |||||||| ||||||||||||| || || | |||||||||    
T  48621868 aacttaagggaggttagtgtatgtttttaaactaaagggggtgttggtgtcatttcaacatatcttaagggaggtga 48621944  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 161 - 210
Target Start/End: Complemental strand, 27573641 - 27573592
Alignment:
Q  161 ttgtatatttgatgagaacttaagggtggtttgtgcaagttttaaaacta 210  Q
    ||||| |||||||||||| ||||||| |||| ||| ||||||||||||||    
T  27573641 ttgtacatttgatgagaatttaagggaggttggtgtaagttttaaaacta 27573592  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 152 - 231
Target Start/End: Original strand, 13231823 - 13231902
Alignment:
Q  152 gggagatgtttgtatatttgatgagaacttaagggtggtttgtgcaagttttaaaactaaatggggtgttagtgtcattt 231  Q
    ||||| |||||||  |||||||||||||| ||||| |||| ||| ||||||||||| || | ||||||| ||||||||||    
T  13231823 gggaggtgtttgtgcatttgatgagaactaaagggaggttagtgtaagttttaaaattagagggggtgtcagtgtcattt 13231902  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 128 - 229
Target Start/End: Complemental strand, 279067 - 278966
Alignment:
Q  128 aaaattaacggcgttaatatggaagggagatgtttgtatatttgatgagaacttaagggtggtttgtgcaagttttaaaactaaatggggtgttagtgtc 227  Q
    ||||||||| | |||||||  |||||||| |||||||  ||||||| | |||||||||| | ||  || |||||||||||||||| ||| ||| ||||||    
T  279067 aaaattaacagtgttaatagtgaagggaggtgtttgtcaatttgataaaaacttaagggagattaatgtaagttttaaaactaaaggggatgtcagtgtc 278968  T
Q  228 at 229  Q
    ||    
T  278967 at 278966  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 128 - 229
Target Start/End: Original strand, 636785 - 636886
Alignment:
Q  128 aaaattaacggcgttaatatggaagggagatgtttgtatatttgatgagaacttaagggtggtttgtgcaagttttaaaactaaatggggtgttagtgtc 227  Q
    ||||||||| | |||||||  |||||||| |||||||  ||||||| | |||||||||| | ||  || |||||||||||||||| ||| ||| ||||||    
T  636785 aaaattaacagtgttaatagtgaagggaggtgtttgtcaatttgataaaaacttaagggagattaatgtaagttttaaaactaaaggggatgtcagtgtc 636884  T
Q  228 at 229  Q
    ||    
T  636885 at 636886  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 128 - 229
Target Start/End: Original strand, 822588 - 822689
Alignment:
Q  128 aaaattaacggcgttaatatggaagggagatgtttgtatatttgatgagaacttaagggtggtttgtgcaagttttaaaactaaatggggtgttagtgtc 227  Q
    ||||||||| | |||||||  |||||||| |||||||  ||||||| | |||||||||| | ||  || |||||||||||||||| ||| ||| ||||||    
T  822588 aaaattaacagtgttaatagtgaagggaggtgtttgtcaatttgataaaaacttaagggagattaatgtaagttttaaaactaaaggggatgtcagtgtc 822687  T
Q  228 at 229  Q
    ||    
T  822688 at 822689  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 158 - 229
Target Start/End: Complemental strand, 35664 - 35593
Alignment:
Q  158 tgtttgtatatttgatgagaacttaagggtggtttgtgcaagttttaaaactaaatggggtgttagtgtcat 229  Q
    |||||||||||||||| | |||||||||  ||||  || ||||||||||||||||  ||||||| |||||||    
T  35664 tgtttgtatatttgataaaaacttaaggaaggttaatgtaagttttaaaactaaaaagggtgtttgtgtcat 35593  T

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Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 160 - 231
Target Start/End: Original strand, 2623231 - 2623302
Alignment:
Q  160 tttgtatatttgatgagaacttaagggtggtttgtgcaagttttaaaactaaatggggtgttagtgtcattt 231  Q
    ||||| |||||||||| |||| ||||| |||| ||| ||||||||||| || ||||| ||| ||||||||||    
T  2623231 tttgtctatttgatgaaaactcaagggaggttagtgtaagttttaaaattagatgggatgtcagtgtcattt 2623302  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 60
Target Start/End: Original strand, 27060600 - 27060653
Alignment:
Q  7 tttattgatggaaaggacgaagccgtgaaagcaacaactaaggtttgttttcgc 60  Q
    ||||||||||||||||||||||||| | ||||||| ||||  ||||||||||||    
T  27060600 tttattgatggaaaggacgaagccggggaagcaacgactattgtttgttttcgc 27060653  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 254
Target Start/End: Complemental strand, 38356945 - 38356849
Alignment:
Q  158 tgtttgtatatttgatgagaacttaagggtggtttgtgcaagttttaaaactaaatggggtgttagtgtcatttcaacgtaactcaggggaggtgag 254  Q
    |||||||||||||||| | |||||||||| ||||  || | |||||||||||| | |||||||| ||||||| | ||   | |||||||||||||||    
T  38356945 tgtttgtatatttgattaaaacttaagggaggttaatgtatgttttaaaactagagggggtgtttgtgtcatattaatagacctcaggggaggtgag 38356849  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 128 - 231
Target Start/End: Complemental strand, 35063745 - 35063642
Alignment:
Q  128 aaaattaacggcgttaatatggaagggagatgtttgtatatttgatgagaacttaagggtggtttgtgcaagttttaaaactaaatggggtgttagtgtc 227  Q
    ||||||||| | |||||||   ||||||||||||||| ||||| || | |||||||||| ||||  || |||||||||||||| | || |||| |||| |    
T  35063745 aaaattaacagtgttaatagataagggagatgtttgtctatttcataaaaacttaagggaggttcatgtaagttttaaaactagagggagtgtcagtgac 35063646  T
Q  228 attt 231  Q
    ||||    
T  35063645 attt 35063642  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 172 - 231
Target Start/End: Complemental strand, 40056407 - 40056348
Alignment:
Q  172 atgagaacttaagggtggtttgtgcaagttttaaaactaaatggggtgttagtgtcattt 231  Q
    ||||||||||||||| ||||  || ||||||| |||||| | ||||||||||||||||||    
T  40056407 atgagaacttaagggaggttaatgtaagttttgaaactagaaggggtgttagtgtcattt 40056348  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 166 - 231
Target Start/End: Original strand, 35064405 - 35064470
Alignment:
Q  166 tatttgatgagaacttaagggtggtttgtgcaagttttaaaactaaatggggtgttagtgtcattt 231  Q
    ||||||||||||| |||||||  ||| |||  ||||||||||||| | ||| ||||||||||||||    
T  35064405 tatttgatgagaatttaagggaagttagtgtgagttttaaaactagaggggatgttagtgtcattt 35064470  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 220
Target Start/End: Complemental strand, 45004843 - 45004751
Alignment:
Q  128 aaaattaacggcgttaatatggaagggagatgtttgtatatttgatgagaacttaagggtggtttgtgcaagttttaaaactaaatggggtgt 220  Q
    ||||||||| | |||||||   ||||||||||||||| ||||| || | |||||||||| ||||  || ||| |||||||||||| |||||||    
T  45004843 aaaattaacagtgttaatagataagggagatgtttgtctatttcataaaaacttaagggaggttcatgtaagatttaaaactaaagggggtgt 45004751  T

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