View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15078_low_1 (Length: 432)
Name: NF15078_low_1
Description: NF15078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15078_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 397; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 15 - 415
Target Start/End: Complemental strand, 3070715 - 3070315
Alignment:
| Q |
15 |
caaaggtgacacgtgtgttgaaattaaatccaatttgtgttgcttcacttatgaagagcttgaagaagctaccaatggatttgacaaagagctaggaagg |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3070715 |
caaaggtgacacgtgtgttgaaattaaatccaatttgtgttgcttcacttatgaagagcttgaagaagctaccaatggatttgacaaagagctaggaagg |
3070616 |
T |
|
| Q |
115 |
ggagcttttggtattgtttacgaaggagtcatcaacaacgacacagattccaaaactcgggtggcagtgcaaaagttaaacagttttttgttggatcaag |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3070615 |
ggagcttttggtattgtttacgaaggagtcatcaacaacgacacagattccaaaactcgggtggcagtgcaaaagttaaacagttttttgttggatcaag |
3070516 |
T |
|
| Q |
215 |
cccatagggaattcaggaatgagttgaattccattggtctcactcatcacaagaacttggttcgtttacttggattttgtgagtgtagaagtgaaagatt |
314 |
Q |
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| T |
3070515 |
cccatagggaattcaggaatgagttgaattccattggtctcactcatcacaagaacttggttcgtttacttggattttgtgagtgtagaagtgaaagatt |
3070416 |
T |
|
| Q |
315 |
gcttgtttatgagtacatgagcaatggcactttggcaagttttcttttcaatgctgatgatgagaaacaaaaaccaagttggaaactgaggctagaactt |
414 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
3070415 |
gcttgtttatgagtacatgagcaatggcactttggcaagttttcttttcaatgctgatgatgagaaacaaaaaccaagttggaaactaaggctagaactt |
3070316 |
T |
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| Q |
415 |
g |
415 |
Q |
| |
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| |
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| T |
3070315 |
g |
3070315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 44 - 415
Target Start/End: Original strand, 3056232 - 3056597
Alignment:
| Q |
44 |
ccaatttgtgttgcttcacttatgaagagcttgaagaagctaccaatggatttgacaaagagctaggaaggggagcttttggtattgtttacgaaggagt |
143 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |
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| T |
3056232 |
ccaatttgcgttgcttcacttatgaagagcttgaagaagctaccaatggatttgacaaagagctaggaaggggagcttttggaatagtttacgaaggagt |
3056331 |
T |
|
| Q |
144 |
catcaacaacgacacagattccaaaactcgggtggcagtgcaaaagttaaacagttttttgttggatcaagcccatagggaattcaggaatgagttgaat |
243 |
Q |
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|||||||||| ||||| || ||||||||| ||||||||| | ||||| ||||||||| ||||||||||||| ||| ||||||||||||||||| ||||| |
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| T |
3056332 |
catcaacaacaacacaacttgcaaaactcgcgtggcagtgaagaagttgaacagttttctgttggatcaagctcatcgggaattcaggaatgagctgaat |
3056431 |
T |
|
| Q |
244 |
tccattggtctcactcatcacaagaacttggttcgtttacttggattttgtgagtgtagaagtgaaagattgcttgtttatgagtacatgagcaatggca |
343 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| | | || |||||||||||||||||||||||||||||||||||||| ||| |
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| T |
3056432 |
gtcattggtctcactcatcacaagaacttggttcgtttacttggattttgcgggagtggaagtgaaagattgcttgtttatgagtacatgagcaatagca |
3056531 |
T |
|
| Q |
344 |
ctttggcaagttttcttttcaatgctgatgatgagaaacaaaaaccaagttggaaactgaggctagaacttg |
415 |
Q |
| |
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||||||||||||||||||||| |||| || ||||| || |||| ||||||||| ||||||||||||| |
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| T |
3056532 |
ctttggcaagttttcttttca------atgaagaaaaacagaagccaaattggaaactaaggctagaacttg |
3056597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 32 - 415
Target Start/End: Original strand, 3035352 - 3035729
Alignment:
| Q |
32 |
ttgaaattaaatccaatttgtgttgcttcacttatgaagagcttgaagaagctaccaatggatttgacaaagagctaggaaggggagcttttggtattgt |
131 |
Q |
| |
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|||||||| ||||| ||||| ||||||||||||||| |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
3035352 |
ttgaaattgaatcccatttgcgttgcttcacttatgcagagcttgaagaagctactaatggattcgacaaagagctaggaaggggagcttttggtattgt |
3035451 |
T |
|
| Q |
132 |
ttacgaaggagtcatcaacaacgacacagattccaaaactcgggtggcagtgcaaaagttaaacagttttttgttggatcaagcccatagggaattcagg |
231 |
Q |
| |
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||| ||||||||| |||||||| |||| | ||||||| |||| |||||||| ||||||| ||||||||| ||||||||||||| |||| |||||| ||| |
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| T |
3035452 |
ttatgaaggagtcgtcaacaacaacaccgcttccaaagctcgtgtggcagtaaaaaagttgaacagttttatgttggatcaagctcataaggaatttagg |
3035551 |
T |
|
| Q |
232 |
aatgagttgaattccattggtctcactcatcacaagaacttggttcgtttacttggattttgtgagtgtagaagtgaaagattgcttgtttatgagtaca |
331 |
Q |
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||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||| |
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| T |
3035552 |
aatgaactgaatgccattggtctcactcatcacaagaacttggttcgtttacttggattttgtgagagtggaagtgaaagactgcttgtttatgagtaca |
3035651 |
T |
|
| Q |
332 |
tgagcaatggcactttggcaagttttcttttcaatgctgatgatgagaaacaaaaaccaagttggaaactgaggctagaacttg |
415 |
Q |
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|||||||| |||||||||||||||||||||||| |||| || ||||| || |||| ||||||||| ||||||||||||| |
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| T |
3035652 |
tgagcaatagcactttggcaagttttcttttca------atgaagaaaaacagaagccaaattggaaactaaggctagaacttg |
3035729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 83 - 204
Target Start/End: Original strand, 21457268 - 21457385
Alignment:
| Q |
83 |
ctaccaatggatttgacaaagagctaggaaggggagcttttggtattgtttacgaaggagtcatcaacaacgacacagattccaaaactcgggtggcagt |
182 |
Q |
| |
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||||| || ||||||||||||||| | ||||| ||| ||||||||||| ||| ||||||||||||| || |||| |||||||||| | |||||||| |
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| T |
21457268 |
ctaccgatagatttgacaaagagcaaagaaggagaggttttggtattg-ttatgaaggagtcatcagca---ccacatgttccaaaactggcgtggcagt |
21457363 |
T |
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| Q |
183 |
gcaaaagttaaacagttttttg |
204 |
Q |
| |
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| |||| || |||| ||||||| |
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| T |
21457364 |
gaaaaaattgaacaattttttg |
21457385 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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