View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15078_low_12 (Length: 214)
Name: NF15078_low_12
Description: NF15078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15078_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 169; Significance: 8e-91; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 2963468 - 2963268
Alignment:
| Q |
1 |
acattgataataccacgtatttcaaagttatacattt-gattaagtcatag-tacatcatgattacaggattacataaagttgctcccataaagtttaca |
98 |
Q |
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| T |
2963468 |
acattgataataccacgtatttcaaagttatacattttgattaagtcataggtacatcatgattacaggattatataaagttgctcccataaagtttaca |
2963369 |
T |
|
| Q |
99 |
aaaaattaattacaagagcaacattttaggctaatcatcgatatcaaacttcctttgcctttacccttgcttgtccgttcatatgt-aaacatgaaatta |
197 |
Q |
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| T |
2963368 |
aaaaattaattacaagagtaacattttaggctaatcatcgatatcaaacttcctttgcctttacccttgcttgtccgttcatatgtaaaacatgaaatta |
2963269 |
T |
|
| Q |
198 |
t |
198 |
Q |
| |
|
| |
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| T |
2963268 |
t |
2963268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 30 - 198
Target Start/End: Complemental strand, 2942752 - 2942582
Alignment:
| Q |
30 |
atacatttgattaagtcatag-tacatcatgattacaggattacataaagttgctcccataaagtttacaaaaaattaattacaagagcaacattttagg |
128 |
Q |
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||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
2942752 |
atacatttgattaagtcataggtacatcatgattaagggattacataaagttgctcccataaagtttacaaaaaattaattacaagagtaacattttagg |
2942653 |
T |
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| Q |
129 |
ctaatcatcgatatcaaacttcctttgcctttacccttgcttgtccgttcatatgt-aaacatgaaattat |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
2942652 |
ctaatcatcgatatcaaacttcctttgcctttacccttgcttgtccgttcatatgtaaaacatgaaattat |
2942582 |
T |
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