View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15078_low_2 (Length: 388)
Name: NF15078_low_2
Description: NF15078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15078_low_2 |
 | |
|
| [»] chr2 (3 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 254; Significance: 1e-141; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 111 - 388
Target Start/End: Complemental strand, 18487235 - 18486958
Alignment:
| Q |
111 |
atgtgcaaataaattgtctcaaagcatgaaagaattgaacagaacaaagcaatgtagagatgaattatttgtttaggactcacattaattgagaaccatt |
210 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18487235 |
atgtgcaaataaattgtctcaaagcatgtaagaattgaacagaacaaagcaatgtagagatgaattatttgtttaggactcacattaattgagaaccatt |
18487136 |
T |
|
| Q |
211 |
tacttgtgaaaggataacactgaaaccttcttcttctgtaaccttgagcaaaccctgcaaaataatttatattggacctattggtaaatatttcttatga |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
18487135 |
tacttgtgaaaggataacactgaaaccttcttcttctgtaaccttgagcaaaccctgcaaaatattttatattggacctattggtaaatatttcttatga |
18487036 |
T |
|
| Q |
311 |
taattacagactttatttcttgtaattaaaaaatatcatgatttaattaccttggtagcatcacagacaatgagacca |
388 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
18487035 |
aaattacaagctttatttcttgtaattaaaaaatatcatgatttaattaccttggtagcatcacaaacaatgagacca |
18486958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 170 - 274
Target Start/End: Complemental strand, 18513542 - 18513441
Alignment:
| Q |
170 |
atgaattatttgtttaggactcacattaattgagaaccatttacttgtgaaaggataacactgaaaccttcttcttctgtaaccttgagcaaaccctgca |
269 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| | ||||||||||||||||| |||||||||| |
|
|
| T |
18513542 |
atgaattatttgtttaaaactcacattaattgagaaccattcacttgtgaaaggataacactgaaac---catcttctgtaaccttgagtaaaccctgca |
18513446 |
T |
|
| Q |
270 |
aaata |
274 |
Q |
| |
|
||||| |
|
|
| T |
18513445 |
aaata |
18513441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 170 - 274
Target Start/End: Complemental strand, 18507101 - 18507000
Alignment:
| Q |
170 |
atgaattatttgtttaggactcacattaattgagaaccatttacttgtgaaaggataacactgaaaccttcttcttctgtaaccttgagcaaaccctgca |
269 |
Q |
| |
|
||||||||||||| || ||| ||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| || |||||||||| |
|
|
| T |
18507101 |
atgaattatttgtctaaaacttacattaattgagaaccatttacttgtgaaaggataacactgaaac---catcttctgtaacctttagtaaaccctgca |
18507005 |
T |
|
| Q |
270 |
aaata |
274 |
Q |
| |
|
||||| |
|
|
| T |
18507004 |
aaata |
18507000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 170 - 237
Target Start/End: Complemental strand, 37046430 - 37046363
Alignment:
| Q |
170 |
atgaattatttgtttaggactcacattaattgagaaccatttacttgtgaaaggataacactgaaacc |
237 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| |||||||||| |||||||||||||||||||| |
|
|
| T |
37046430 |
atgaattatttgtttgaaactcacattaattgagaaacatttacttgggaaaggataacactgaaacc |
37046363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University