View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15078_low_4 (Length: 326)

Name: NF15078_low_4
Description: NF15078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15078_low_4
NF15078_low_4
[»] chr1 (1 HSPs)
chr1 (18-309)||(38659760-38660053)


Alignment Details
Target: chr1 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 18 - 309
Target Start/End: Complemental strand, 38660053 - 38659760
Alignment:
Q  18 atgaagtaagaaaatataaagagaataatagtgttaaaataggagagtgcttcattttaaatatagtttctactaaaaattaggaaaaat--gagataca 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  38660053 atgaagtaagaaaatataaagagaataatagtgttaaaataggagagtgcttcattttaaatatagtttctactaaaaattaggaaaaatatgagataca 38659954  T
Q  116 aattaattggcttagtgagtgtcaagtgtaaaaacaactagatgaaaggaataaagtcacaaatagtaacctttagtttgaggaagttgaaagaaaaacc 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38659953 aattaattggcttagtgagtgtcaagtgtaaaaacaactagatgaaaggaataaagtcacaaatagtaacctttagtttgaggaagttgaaagaaaaacc 38659854  T
Q  216 aaaggagattctactttctatgttcaagtgactaggagcactagtagactatagaacacacaagttgcaattgagttataaggtaatggaactg 309  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  38659853 aaaggagattctactttctatgttcaagtgactaggagcactagtacactatagaacacacaagttgcaattgagttataaggtaatggaactg 38659760  T

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