View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15078_low_5 (Length: 312)
Name: NF15078_low_5
Description: NF15078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15078_low_5 |
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| [»] chr1 (3 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 278; Significance: 1e-155; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 11 - 312
Target Start/End: Original strand, 9699768 - 9700069
Alignment:
| Q |
11 |
caaagggttaacataacagatttcggggaagaaccaaaagaaagaccagagcaaatggcacaagcaaccatgataatgagtgtgacaccataaactttct |
110 |
Q |
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| T |
9699768 |
caaagggttatcataacagatttcgcggaagaaccaaaagaaagaccagagcaaatggcacaagcaaccatgataatgagtgtgacaccataaactttct |
9699867 |
T |
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| Q |
111 |
tgcgtccaagtttgtctccgagccagccgaagactaattggccagaaagtgttccgacaagggccacaccggtgactaagttattaattgttggtggaag |
210 |
Q |
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| T |
9699868 |
tgcgtccaagtttgtctccgagccagccgaagactaattggccagaaagtgttccgacaagggccacaccggtgactacattattaactgatggtggaag |
9699967 |
T |
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| Q |
211 |
cttccctggtttgttagtgcttggatcaaagtaatataatcgtcccaagagcttcgaaacggttgaaatgcagaacagatcataggcatcagtgaagaat |
310 |
Q |
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| T |
9699968 |
cttccctggtttgttagtgcttggatcaaagtaatataatcgtcccaagagcttcgaaacggttgaaatgcagaacagatcataggcatcagtgaagaat |
9700067 |
T |
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| Q |
311 |
cc |
312 |
Q |
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|| |
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| T |
9700068 |
cc |
9700069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 312
Target Start/End: Complemental strand, 16183906 - 16183869
Alignment:
| Q |
275 |
gaaatgcagaacagatcataggcatcagtgaagaatcc |
312 |
Q |
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| T |
16183906 |
gaaatgcagaaaagatcatatgcatcagtgaagaatcc |
16183869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 312
Target Start/End: Complemental strand, 16223296 - 16223259
Alignment:
| Q |
275 |
gaaatgcagaacagatcataggcatcagtgaagaatcc |
312 |
Q |
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| T |
16223296 |
gaaatgcagaaaagatcatatgcatcagtgaagaatcc |
16223259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 278 - 312
Target Start/End: Complemental strand, 38893103 - 38893069
Alignment:
| Q |
278 |
atgcagaacagatcataggcatcagtgaagaatcc |
312 |
Q |
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| T |
38893103 |
atgcagaacagatcataggcatcagtaaagaatcc |
38893069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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