View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15078_low_7 (Length: 267)
Name: NF15078_low_7
Description: NF15078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15078_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 11 - 251
Target Start/End: Complemental strand, 52918931 - 52918691
Alignment:
| Q |
11 |
atgaagatggcaagaagatttggacattgaggctgaaagctactcttgatagatcaaagaggcttactgaggaatataccgaagaacttcttaagatatt |
110 |
Q |
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| T |
52918931 |
atgaagatggcaagaagatttggacattgaggctgaaagctactcttgatagatcaaagagtcttactgaggaatataccgaagaacttcttaagatatt |
52918832 |
T |
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| Q |
111 |
tcctcaaaaagtggaggttaaatagtaatttattgttcagataaagcctggtatttattgtgcagtgcaaaattttactaaaccaatataatataaactc |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52918831 |
tcctcaaaaagtggaggttaaatagtaatttattgttcagataaagcctggtatttattgtgcagtgcaaaattttactaaaccaatataatataaactc |
52918732 |
T |
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| Q |
211 |
ataaagtgaagcccaagtacaaccaaaactagggaataatt |
251 |
Q |
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| T |
52918731 |
acaaagtgaagcccaagtacaaccaaaactagggaataatt |
52918691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 11 - 251
Target Start/End: Complemental strand, 35230664 - 35230424
Alignment:
| Q |
11 |
atgaagatggcaagaagatttggacattgaggctgaaagctactcttgatagatcaaagaggcttactgaggaatataccgaagaacttcttaagatatt |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |
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| T |
35230664 |
atgaagatggcaagaagatttggacattgaggctgaaagctactcttgatagatcaaagaggcttactgaggaatatactgaagaacttcttcagatatt |
35230565 |
T |
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| Q |
111 |
tcctcaaaaagtggaggttaaatagtaatttattgttcagataaagcctggtatttattgtgcagtgcaaaattttactaaaccaatataatataaactc |
210 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35230564 |
tcctcaaaaagtggaggttaaatagtaatctattgttcagataaagcctggtatttattgtgcagtgcaaaattttactaaaccaatataatataaactc |
35230465 |
T |
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| Q |
211 |
ataaagtgaagcccaagtacaaccaaaactagggaataatt |
251 |
Q |
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| ||||||||||||||||||||||||||||||||||||||| |
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| T |
35230464 |
acaaagtgaagcccaagtacaaccaaaactagggaataatt |
35230424 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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