View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15078_low_8 (Length: 255)
Name: NF15078_low_8
Description: NF15078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15078_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 18513310 - 18513074
Alignment:
| Q |
1 |
accaccatctttagatgtagtgattccaagcaaagaagaactatctatatgcttccaattctcccaatttccatttctaaccattcttttaatccatcca |
100 |
Q |
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| T |
18513310 |
accaccatctttagatgtagtgattccaagcaaagaagagctatctatatgcttccaattctcccaattttcattcctaaccattcttttaatccaacca |
18513211 |
T |
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| Q |
101 |
tctcttgtagctgtatatagaacaccatctttatcaacacaaacatcttctggttgtttcagaaatccttctccaagtttaatcacattctgttatgtta |
200 |
Q |
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| T |
18513210 |
tctcttgtagctgtatatagaacaccatttttatcaacacaaacatcttctggttgtttcagaaatccttctccgagtttaatcacattctgttatgtta |
18513111 |
T |
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| Q |
201 |
tggaaacattaatagacaattaaatacatattatttt |
237 |
Q |
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| T |
18513110 |
tggaaacattaatagataattaaatacatattatttt |
18513074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 18486961 - 18486725
Alignment:
| Q |
1 |
accaccatctttagatgtagtgattccaagcaaagaagaactatctatatgcttccaattctcccaatttccatttctaaccattcttttaatccatcca |
100 |
Q |
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|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |
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| T |
18486961 |
accaccatctttagatgttgtgattccaagcaaagaagagctatctatatgcttccaattctcccaatttccattcctaaccattcttttaatccaacca |
18486862 |
T |
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| Q |
101 |
tctcttgtagctgtatatagaacaccatctttatcaacacaaacatcttctggttgtttcagaaatccttctccaagtttaatcacattctgttatgtta |
200 |
Q |
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| T |
18486861 |
tctcttgttgctgtatataaaataccatctttatcaacacaaacatcttctggttgtttcagaaatccttctccgagtttaatcacattctgttatgtta |
18486762 |
T |
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| Q |
201 |
tggaaacattaatagacaattaaatacatattatttt |
237 |
Q |
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| T |
18486761 |
tggaaacattaatagacaattaaatacatattatttt |
18486725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 18506812 - 18506626
Alignment:
| Q |
1 |
accaccatctttagatgtagtgattccaagcaaagaagaactatctatatgcttccaattctcccaatttccatttctaaccattcttttaatccatcca |
100 |
Q |
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|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |||||||||||||||||||| ||| |
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| T |
18506812 |
accaccatctttagatgtagtgattccaagcaaagaagagctatctatatgcttccaattctcccaattttcattcctaaccattcttttaatccaacca |
18506713 |
T |
|
| Q |
101 |
tctcttgtagctgtatatagaacaccatctttatcaacacaaacatcttctggttgtttcagaaatccttctccaagtttaatcaca |
187 |
Q |
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| T |
18506712 |
tctcttgtagctgtatatagaacaccatctttatcaacacaaacatcttctggttgtttcagaaatccttctccaagtttaatcaca |
18506626 |
T |
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