View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15079_high_2 (Length: 402)
Name: NF15079_high_2
Description: NF15079
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15079_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 12 - 378
Target Start/End: Complemental strand, 4031654 - 4031273
Alignment:
| Q |
12 |
gcaaaggtgatgtgagtgaaagacgcacacttatgagaaatatcgttgaagttcaaatgtcggttatttgactatgaatgacttaaatgaataacatata |
111 |
Q |
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| T |
4031654 |
gcaaaggtgatgtgagttaaagacgcacacttatgagaaatatggttgaagttcaaatgtcggttatttgactatgaatgagttaaatgaataacatata |
4031555 |
T |
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| Q |
112 |
aaagagatgacctattt-tccaaagttccttgaacttccccaacaaatatgttactataatcttatatatctatgattaacatatttatagaactatgaa |
210 |
Q |
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| T |
4031554 |
aaagagatgacctatttgtccaaagttccttgaacttccccaacaaatatgttactataatcttatatatctatgattaacatatttatagaactatgaa |
4031455 |
T |
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| Q |
211 |
gacaattacaaagaaacaaaaaacaagcatatcccttc---------------atttgttaattaattgaagagaaggttaaaatcaaccatctacaatt |
295 |
Q |
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| T |
4031454 |
gacaattac-aagaaacaaaaaacaagcatatcccttcatttgatatccctttatttgttaattaattgaagagaaggttaaaatcaaccatctacaatt |
4031356 |
T |
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| Q |
296 |
aaagtcaattaggagagattataattattgtcatatcatatggtcatctcttcactagttaggtgaattacaaagatgtgata |
378 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4031355 |
aaagtcaattaggagagattataattattgtcatatcatatggtcatctcttcactagttaggtgaattacaaagatgtgata |
4031273 |
T |
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