View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15079_low_1 (Length: 454)
Name: NF15079_low_1
Description: NF15079
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15079_low_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 375; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 18 - 436
Target Start/End: Complemental strand, 2041384 - 2040966
Alignment:
| Q |
18 |
tatctgcgagaaggaagccatcatcatcactgcttttgtttcaaaggaatcctgttatgatgaaaagaaaggatcaaacacctttggttgatctttgtgt |
117 |
Q |
| |
|
|||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2041384 |
tatctgcgagaaagaagccatcatcatcggtgcttttgtttcaaaggaatcctgttatgatgaaaagaaaggatcaaacacctttggttgatctttgtgt |
2041285 |
T |
|
| Q |
118 |
tgagaaagctattgataatgtaaaataccttggagatgttagtcatgttgatcatcatatgcttgagaaagtcttgcctcactgcacacttgatcagttg |
217 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | |||||||||||||||||||||| |||||| |
|
|
| T |
2041284 |
tgagaaaggtattgataatgtaaaataccttggagatgttagtcatgttgatcatgatatgcttgagagaatcttgcctcactgcacacttgaccagttg |
2041185 |
T |
|
| Q |
218 |
atgcatattgagaagtccactcaagggatggatttgatccctataacagatcaattgtggaaaaagttctttgagaagcagtttggtataaattgcacta |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2041184 |
atgcatattgagaagtccactcaagggatggatttgagccctataacagatcaattgtggagaaagttctttgagaagcagtttggtataaattgcacta |
2041085 |
T |
|
| Q |
318 |
atgaagtagttaagaagatgaaagaaaaaagagtttcattcacttggttgcagctgtatgaggctaaggtcaaaaaagtggctcagactgagaatgaagc |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
2041084 |
atgaagtagttaagaagatgaaagaaaaaagagtttcattcacttggttgcagctgtatgaggctaaggtcaaaagagtggctcagactgagaatgaagc |
2040985 |
T |
|
| Q |
418 |
agttgatcgactcgcgcaa |
436 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
2040984 |
agttgatcgactcgcgcaa |
2040966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 68 - 436
Target Start/End: Original strand, 1357444 - 1357812
Alignment:
| Q |
68 |
cctgttatgatgaaaagaaaggatcaaacacctttggttgatctttgtgttgagaaagctattgataatgtaaaataccttggagatgttagtcatgttg |
167 |
Q |
| |
|
|||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1357444 |
cctgttatgatgaagagaaaggatcaaacatgtttggttgatctttgtgttgagaaagctattgataatgtaaaataccttggagatgttagtcatgttg |
1357543 |
T |
|
| Q |
168 |
atcatcatatgcttgagaaagtcttgcctcactgcacacttgatcagttgatgcatattgagaagtccactcaagggatggatttgatccctataacaga |
267 |
Q |
| |
|
|||||||||||||||||| | |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
1357544 |
atcatcatatgcttgagagaatcttgcctcactgcacacttgaacagttgatgcatattgagaagtccactcaagggatggatttgagccctataacaga |
1357643 |
T |
|
| Q |
268 |
tcaattgtggaaaaagttctttgagaagcagtttggtataaattgcactaatgaagtagttaagaagatgaaagaaaaaagagtttcattcacttggttg |
367 |
Q |
| |
|
| |||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1357644 |
taaattgtggaaaaagttctttgaaaagcaatttggtataaattgcactaatgaagtagttaagaagatgaaagaaaaaagagtttcattcacttggttg |
1357743 |
T |
|
| Q |
368 |
cagctgtatgaggctaaggtcaaaaaagtggctcagactgagaatgaagcagttgatcgactcgcgcaa |
436 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1357744 |
cagctgtatgaggctaaggtcaaaaaagtggctcagactgagaatgaagcagttgatcgactcgcgcaa |
1357812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 8 - 430
Target Start/End: Original strand, 1352263 - 1352672
Alignment:
| Q |
8 |
agagatgaaatatctgcgagaaggaagccatcatcatcactgcttttgtttcaaaggaatcctgttatgatgaaaagaaaggatcaaacacctttggttg |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1352263 |
agagatgaaatatctgcgagaaggaagccatcatcatcggtgcttttgtttcaaaggaatcctgttatgatgaaaagaaaggatcaaacacctttggttg |
1352362 |
T |
|
| Q |
108 |
atctttgtgttgagaaagctattgataatgtaaaataccttggagatgttagtcatgttgatcatcatatgcttgagaaagtcttgcctcactgcacact |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |
|
|
| T |
1352363 |
atctttgtgttgagaaagctattgataatgtaaaataccttggagatgttagtcatgttgatcatcatatgcttgagagaatcttgcctcactgcacact |
1352462 |
T |
|
| Q |
208 |
tgatcagttgatgcatattgagaagtccactcaagggatggatttgatccctataacagatcaattgtggaaaaagttctttgagaagcagtttggtata |
307 |
Q |
| |
|
||| ||||||||||||||||||||| | | | ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
1352463 |
tgaacagttgatgcatattgagaagacaaataaagggatggatttgagccctataacagatcaattgtggaaaaagttctttgagaagcaatttggtata |
1352562 |
T |
|
| Q |
308 |
aattgcactaatgaagtagttaagaagatgaaagaaaaaagagtttcattcacttggttgcagctgtatgaggctaaggtcaaaaaagtggctcagactg |
407 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| ||||||||| |||||| | ||| |
|
|
| T |
1352563 |
aattgcactaatgaagtagttaagaagatgaaagaaa-------------cacttggttgcagttgtatgaggctaaagtcaaaaaaatggctcgggctg |
1352649 |
T |
|
| Q |
408 |
agaatgaagcagttgatcgactc |
430 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
1352650 |
agaatgaagcagttgatcgactc |
1352672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 122 - 436
Target Start/End: Original strand, 1364328 - 1364629
Alignment:
| Q |
122 |
aaagctattgataatgtaaaataccttggagatgttagtcatgttgatcatcatatgcttgagaaagtcttgcctcactgcacacttgatcagttgatgc |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |||||||||| |
|
|
| T |
1364328 |
aaagctattgataatgtaaaataccttggagatgttagtcatgttgatcatcatatgcttgagagaatcttgcctcactgcacacttgaacagttgatgc |
1364427 |
T |
|
| Q |
222 |
atattgagaagtccactcaagggatggatttgatccctataacagatcaattgtggaaaaagttctttgagaagcagtttggtataaattgcactaatga |
321 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
1364428 |
atattgagaagtccactcaagggatggatttgagccctataacagatcaattgtggaaaaagttctttgagaagcaatttggtataaattgcactaatga |
1364527 |
T |
|
| Q |
322 |
agtagttaagaagatgaaagaaaaaagagtttcattcacttggttgcagctgtatgaggctaaggtcaaaaaagtggctcagactgagaatgaagcagtt |
421 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||| ||||||||||||| ||||||||| |||||| | ||||||||||||||||| |
|
|
| T |
1364528 |
agtagttaagaagatgaaagaaa-------------cacttggttgcagttgtatgaggctaaagtcaaaaaaatggctcgggctgagaatgaagcagtt |
1364614 |
T |
|
| Q |
422 |
gatcgactcgcgcaa |
436 |
Q |
| |
|
||||||||| ||||| |
|
|
| T |
1364615 |
gatcgactcacgcaa |
1364629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 53 - 436
Target Start/End: Original strand, 36717341 - 36717724
Alignment:
| Q |
53 |
ttgtttcaaaggaatcctgttatgatgaaaagaaaggatcaaacacctttggttgatctttgtgttgagaaagctattgataatgtaaaataccttggag |
152 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36717341 |
ttgtttcaaaggaatcctgttatgatgaagagaaaggatcaaacatctttggttgatctttgtgttgagaaagctattgataatgtaaaataccttggag |
36717440 |
T |
|
| Q |
153 |
atgttagtcatgttgatcatcatatgcttgagaaagtcttgcctcactgcacacttgatcagttgatgcatattgagaagtccactcaagggatggattt |
252 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| | | | ||||||||||||| |
|
|
| T |
36717441 |
atgttagtcatgttgatcatcatatgcttgagagaatcttgcctcactgcacacttgatcagttgatgcatattgagaaggcaagtgaagggatggattt |
36717540 |
T |
|
| Q |
253 |
gatccctataacagatcaattgtggaaaaagttctttgagaagcagtttggtataaattgcactaatgaagtagttaagaagatgaaagaaaaaagagtt |
352 |
Q |
| |
|
|| ||||||||| ||| ||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36717541 |
gagccctataactgataaattgtggaaaaaattctttgaaaagcagtttggtataaattgcactaatgaagtagttaagaagatgaaagaaaaaagagtt |
36717640 |
T |
|
| Q |
353 |
tcattcacttggttgcagctgtatgaggctaaggtcaaaaaagtggctcagactgagaatgaagcagttgatcgactcgcgcaa |
436 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
36717641 |
tcattcacttggttgcagctgtatgaggctaaggtaaaaaaaatggctcaggctgagaatgaagcagttgatcgactcgcgcaa |
36717724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 167; Significance: 3e-89; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 74 - 368
Target Start/End: Complemental strand, 24620630 - 24620337
Alignment:
| Q |
74 |
atgatgaaaagaaaggatcaaacacctttggttgatctttgtgttgagaaagctattgataatgtaaaataccttggagatgttagtcatgttgatcatc |
173 |
Q |
| |
|
|||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24620630 |
atgatgaagagaaaggatcaaacatatttggttgatctttgtgttgagaaagctattgataatgtaaaataccttggagatgttagtcatgttgatcatc |
24620531 |
T |
|
| Q |
174 |
atatgcttgagaaagtcttgcctcactgcacacttgatcagttgatgcatattgagaagtccactcaagggatggatttgatccctataacagatcaatt |
273 |
Q |
| |
|
||||||||||| | |||||||||||||||||||||| | | ||||||||||||||| ||| | || |||||||||||| || |||| | || || | |
|
|
| T |
24620530 |
atatgcttgagtgaatcttgcctcactgcacacttgaccggaacatgcatattgagaaggccaatgaa-ggatggatttgagccatatatcgaataaact |
24620432 |
T |
|
| Q |
274 |
gtggaaaaagttctttgagaagcagtttggtataaattgcactaatgaagtagttaagaagatgaaagaaaaaagagtttcattcacttggttgc |
368 |
Q |
| |
|
|||||||||||| |||| |||||||||||||||| |||||| ||||||||||||||| | ||||||||||||| |||||||||||| ||||||| |
|
|
| T |
24620431 |
gtggaaaaagtttattgaaaagcagtttggtataatttgcacaaatgaagtagttaaggatatgaaagaaaaaatagtttcattcacatggttgc |
24620337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 242 - 380
Target Start/End: Complemental strand, 18180026 - 18179888
Alignment:
| Q |
242 |
gggatggatttgatccctataacagatcaattgtggaaaaagttctttgagaagcagtttggtataaattgcactaatgaagtagttaagaagatgaaag |
341 |
Q |
| |
|
||||||||||||| ||| |||||||| |||||||||||||||||||||| |||||||||||||||| |||||| |||||| || ||| || ||||| || |
|
|
| T |
18180026 |
gggatggatttgagcccggtaacagataaattgtggaaaaagttctttgaaaagcagtttggtataagttgcacaaatgaaataattaggaggatgacag |
18179927 |
T |
|
| Q |
342 |
aaaaaagagtttcattcacttggttgcagctgtatgagg |
380 |
Q |
| |
|
|||||||||| ||||||| ||||||||| ||||||||| |
|
|
| T |
18179926 |
aaaaaagagtgtcattcagatggttgcagttgtatgagg |
18179888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 102 - 232
Target Start/End: Complemental strand, 18180249 - 18180119
Alignment:
| Q |
102 |
tggttgatctttgtgttgagaaagctattgataatgtaaaataccttggagatgttagtcatgttgatcatcatatgcttgagaaagtcttgcctcactg |
201 |
Q |
| |
|
||||||||||||||||| | | |||||| |||||| ||| |||||||||| ||||| ||| ||||||||||||| ||||||| | ||||||| ||||| |
|
|
| T |
18180249 |
tggttgatctttgtgttcaaacagctatagataatttaagataccttggaaatgttggtcctgttgatcatcatctgcttgaacgaatcttgccacactg |
18180150 |
T |
|
| Q |
202 |
cacacttgatcagttgatgcatattgagaag |
232 |
Q |
| |
|
||||||||| ||||||| |||||| |||||| |
|
|
| T |
18180149 |
cacacttgaccagttgacgcatatcgagaag |
18180119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 378 - 430
Target Start/End: Complemental strand, 18179711 - 18179659
Alignment:
| Q |
378 |
aggctaaggtcaaaaaagtggctcagactgagaatgaagcagttgatcgactc |
430 |
Q |
| |
|
||||||||| ||| ||||||||||| |||||||||||||| ||||||||||| |
|
|
| T |
18179711 |
aggctaagggaaaagaagtggctcaggctgagaatgaagcaattgatcgactc |
18179659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University