View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15079_low_3 (Length: 394)

Name: NF15079_low_3
Description: NF15079
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15079_low_3
NF15079_low_3
[»] chr8 (4 HSPs)
chr8 (9-378)||(34743520-34743886)
chr8 (9-184)||(10773184-10773357)
chr8 (269-313)||(12503301-12503345)
chr8 (257-313)||(34743184-34743240)
[»] chr5 (4 HSPs)
chr5 (44-225)||(25760218-25760398)
chr5 (125-195)||(25803636-25803706)
chr5 (286-315)||(38299926-38299955)
chr5 (269-313)||(15238975-15239019)
[»] scaffold0005 (1 HSPs)
scaffold0005 (97-220)||(269287-269410)
[»] scaffold0085 (1 HSPs)
scaffold0085 (97-225)||(47014-47142)
[»] chr2 (3 HSPs)
chr2 (119-224)||(19984284-19984389)
chr2 (117-226)||(12965270-12965378)
chr2 (286-316)||(37828443-37828473)
[»] chr1 (1 HSPs)
chr1 (282-315)||(42175309-42175342)
[»] chr3 (4 HSPs)
chr3 (282-314)||(25858059-25858091)
chr3 (269-313)||(1885127-1885171)
chr3 (269-313)||(30528337-30528381)
chr3 (286-322)||(38421390-38421426)
[»] scaffold0097 (1 HSPs)
scaffold0097 (272-313)||(48082-48123)
[»] chr4 (1 HSPs)
chr4 (284-313)||(52073270-52073299)
[»] chr7 (4 HSPs)
chr7 (286-314)||(1505542-1505570)
chr7 (287-315)||(23475762-23475790)
chr7 (287-315)||(23534175-23534203)
chr7 (282-318)||(33859474-33859510)
[»] chr6 (3 HSPs)
chr6 (282-318)||(25562580-25562616)
chr6 (282-318)||(26002031-26002067)
chr6 (286-318)||(26102096-26102128)


Alignment Details
Target: chr8 (Bit Score: 284; Significance: 1e-159; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 9 - 378
Target Start/End: Original strand, 34743520 - 34743886
Alignment:
Q  9 gattattctgcgacatgatccctttgttttggttcgtattccctgagcatcgtaattacaacaacatttttttccttatannnnnnnnaataatttcata 108  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||        ||||||||||||    
T  34743520 gattattctgcaacatgatccctttgttttggttcgtattccctgagcatcgtaattacaaca---tttttttccttatattttttttaataatttcata 34743616  T
Q  109 ttactttctgaaatttgaatcgaaggttcctatggaggaaacgccataaatcagtgcgttgtttattcaagtttgctttcaatatcagacttcaaaggaa 208  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34743617 ttactttttgaaatttgaatcgaaggttcctatggaggaaacgccataaatcagtgcgttgtttattcaagtttgctttcaatatcagacttcaaaggaa 34743716  T
Q  209 caaggaaaaagaaataatcgtagaagatgagtcttaactgacacgggatattttggactgttcagttggaatggagtgttttttgttgggagaagagcaa 308  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| | ||||||||| || ||||  ||||||| ||||||||||||||    
T  34743717 caaggaaaaagaaataatcgtagaagatgagtcttaacttacacggggtattttgggcagttcagttgaaagggagcattttttgctgggagaagagcaa 34743816  T
Q  309 ttttccacaacaaattgcatccaacttatagttataacccgaacctacaaccatttgttgcatatatttg 378  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  34743817 ttttccacaacaaattgcatccaacttatagttatagcccgaacctacaaccatttgttgcatatatttg 34743886  T

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Target: chr8; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 9 - 184
Target Start/End: Complemental strand, 10773357 - 10773184
Alignment:
Q  9 gattattctgcgacatgatccctttgttttggttcgtattccctgagcatcgtaattacaacaacatttttttccttatannnnnnnnaataatttcata 108  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||| |  |    |||  |||||||   || ||        ||||||||||||    
T  10773357 gattattctgcaacatgatccctttgttttggttcgtattccctgagcatcatcctattcacacaatttttta--ttttatttttattaataatttcata 10773260  T
Q  109 ttactttctgaaatttgaatcgaaggttcctatggaggaaacgccataaatcagtgcgttgtttattcaagtttgc 184  Q
     |||||| |||||| |||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||    
T  10773259 gtactttttgaaatatgaatcgaaggttcctatggaggagacgccataaatcaatgcgttgtttattcaagtttgc 10773184  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 269 - 313
Target Start/End: Complemental strand, 12503345 - 12503301
Alignment:
Q  269 ttcagttggaatggagtgttttttgttgggagaagagcaattttc 313  Q
    ||||||||| | |||||||||||||||||||||||||||||||||    
T  12503345 ttcagttgggagggagtgttttttgttgggagaagagcaattttc 12503301  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 257 - 313
Target Start/End: Complemental strand, 34743240 - 34743184
Alignment:
Q  257 tattttggactgttcagttggaatggagtgttttttgttgggagaagagcaattttc 313  Q
    |||||||||| |||||||||| | ||||  ||||||||||||||||||||| |||||    
T  34743240 tattttggacagttcagttgggagggagcattttttgttgggagaagagcatttttc 34743184  T

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Target: chr5 (Bit Score: 98; Significance: 4e-48; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 44 - 225
Target Start/End: Original strand, 25760218 - 25760398
Alignment:
Q  44 gtattccctgagcatcgtaattacaacaacatttttttccttatannnnnnnnaataatttcatattactttctgaaatttgaatcgaaggttcctatgg 143  Q
    ||||||| || ||||||||||||||||||||| |||| |||| ||        |||||||||||||| |||| |||||||||||||||||||| ||||||    
T  25760218 gtattccatgtgcatcgtaattacaacaacatctttt-ccttctattttttttaataatttcatatttctttttgaaatttgaatcgaaggtttctatgg 25760316  T
Q  144 aggaaacgccataaatcagtgcgttgtttattcaagtttgctttcaatatcagacttcaaaggaacaaggaaaaagaaataa 225  Q
    ||||||| |||||||||  ||| |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||    
T  25760317 aggaaacaccataaatcgatgccttgtttattcaagtttgctttcaataccaggcttcaaaggaacaaggaaaaagaaataa 25760398  T

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Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 125 - 195
Target Start/End: Complemental strand, 25803706 - 25803636
Alignment:
Q  125 gaatcgaaggttcctatggaggaaacgccataaatcagtgcgttgtttattcaagtttgctttcaatatca 195  Q
    |||||||||||| ||||||||||||| |||||||||  ||| ||||||| |||||||||||||||||||||    
T  25803706 gaatcgaaggtttctatggaggaaacaccataaatcgatgccttgtttaatcaagtttgctttcaatatca 25803636  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 315
Target Start/End: Original strand, 38299926 - 38299955
Alignment:
Q  286 gttttttgttgggagaagagcaattttcca 315  Q
    ||||||||||||||||||||||||||||||    
T  38299926 gttttttgttgggagaagagcaattttcca 38299955  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 313
Target Start/End: Original strand, 15238975 - 15239019
Alignment:
Q  269 ttcagttggaatggagtgttttttgttgggagaagagcaattttc 313  Q
    ||||||||| |  ||| ||||||||||||||||||||||||||||    
T  15238975 ttcagttgggagtgagcgttttttgttgggagaagagcaattttc 15239019  T

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Target: scaffold0005 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 97 - 220
Target Start/End: Complemental strand, 269410 - 269287
Alignment:
Q  97 aataatttcatattactttctgaaatttgaatcgaaggttcctatggaggaaacgccataaatcagtgcgttgtttattcaagtttgctttcaatatcag 196  Q
    |||||||||||||| |||| |||||||||||||||||||||||||||||||||| ||||||||| |||| || ||||||||||||||||| ||||||||     
T  269410 aataatttcatatttctttttgaaatttgaatcgaaggttcctatggaggaaacaccataaatcggtgccttttttattcaagtttgcttccaatatcaa 269311  T
Q  197 acttcaaaggaacaaggaaaaaga 220  Q
     |||||||||||||||||||||||    
T  269310 gcttcaaaggaacaaggaaaaaga 269287  T

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Target: scaffold0085 (Bit Score: 81; Significance: 5e-38; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 97 - 225
Target Start/End: Original strand, 47014 - 47142
Alignment:
Q  97 aataatttcatattactttctgaaatttgaatcgaaggttcctatggaggaaacgccataaatcagtgcgttgtttattcaagtttgctttcaatatcag 196  Q
    |||||||||||||| |||| |||||||||||||||||||| | |||||| |||| |||||||||  | | |||||||||||||||||||||||||| |||    
T  47014 aataatttcatatttctttttgaaatttgaatcgaaggtttcgatggagaaaacaccataaatcgataccttgtttattcaagtttgctttcaataccag 47113  T
Q  197 acttcaaaggaacaaggaaaaagaaataa 225  Q
     ||||||||||||||||||||||||||||    
T  47114 gcttcaaaggaacaaggaaaaagaaataa 47142  T

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Target: chr2 (Bit Score: 70; Significance: 2e-31; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 119 - 224
Target Start/End: Complemental strand, 19984389 - 19984284
Alignment:
Q  119 aaatttgaatcgaaggttcctatggaggaaacgccataaatcagtgcgttgtttattcaagtttgctttcaatatcagacttcaaaggaacaaggaaaaa 218  Q
    |||||||||||||||||| ||||||||||||| |||||||||  ||| ||||||||||||||||||||| ||||  || |||||||||||||||||||||    
T  19984389 aaatttgaatcgaaggtttctatggaggaaacaccataaatcgatgccttgtttattcaagtttgcttttaatactaggcttcaaaggaacaaggaaaaa 19984290  T
Q  219 gaaata 224  Q
    ||||||    
T  19984289 gaaata 19984284  T

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Target: chr2; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 117 - 226
Target Start/End: Complemental strand, 12965378 - 12965270
Alignment:
Q  117 tgaaatttgaatcgaaggttcctatggaggaaacgccataaatcagtgcgttgtttattcaagtttgctttcaatatcagacttcaaaggaacaaggaaa 216  Q
    ||||||||||||||||||||| || | ||||||| ||||| |||  ||| ||||||||||||||||| |||||||||||| ||||||||||| |||||||    
T  12965378 tgaaatttgaatcgaaggttc-taggaaggaaacaccatagatcgatgccttgtttattcaagtttgatttcaatatcaggcttcaaaggaataaggaaa 12965280  T
Q  217 aagaaataat 226  Q
    ||||||||||    
T  12965279 aagaaataat 12965270  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 286 - 316
Target Start/End: Complemental strand, 37828473 - 37828443
Alignment:
Q  286 gttttttgttgggagaagagcaattttccac 316  Q
    |||||||||||||||||||||||||||||||    
T  37828473 gttttttgttgggagaagagcaattttccac 37828443  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 282 - 315
Target Start/End: Original strand, 42175309 - 42175342
Alignment:
Q  282 gagtgttttttgttgggagaagagcaattttcca 315  Q
    ||||||||||||||||||||||||||||||||||    
T  42175309 gagtgttttttgttgggagaagagcaattttcca 42175342  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 282 - 314
Target Start/End: Original strand, 25858059 - 25858091
Alignment:
Q  282 gagtgttttttgttgggagaagagcaattttcc 314  Q
    |||||||||||||||||||||||||||||||||    
T  25858059 gagtgttttttgttgggagaagagcaattttcc 25858091  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 313
Target Start/End: Complemental strand, 1885171 - 1885127
Alignment:
Q  269 ttcagttggaatggagtgttttttgttgggagaagagcaattttc 313  Q
    ||||||||| | ||||||||||||| ||||||||||||| |||||    
T  1885171 ttcagttgggagggagtgttttttgatgggagaagagcatttttc 1885127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 313
Target Start/End: Complemental strand, 30528381 - 30528337
Alignment:
Q  269 ttcagttggaatggagtgttttttgttgggagaagagcaattttc 313  Q
    ||||||||| |  ||||||||||||||||||||| ||||||||||    
T  30528381 ttcagttggtagtgagtgttttttgttgggagaaaagcaattttc 30528337  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 286 - 322
Target Start/End: Original strand, 38421390 - 38421426
Alignment:
Q  286 gttttttgttgggagaagagcaattttccacaacaaa 322  Q
    |||||||||||||||||||||||||||| | ||||||    
T  38421390 gttttttgttgggagaagagcaattttctaaaacaaa 38421426  T

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Target: scaffold0097 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 313
Target Start/End: Original strand, 48082 - 48123
Alignment:
Q  272 agttggaatggagtgttttttgttgggagaagagcaattttc 313  Q
    |||||| ||| |||||||||||||||||||| ||||||||||    
T  48082 agttgggatgaagtgttttttgttgggagaatagcaattttc 48123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 284 - 313
Target Start/End: Complemental strand, 52073299 - 52073270
Alignment:
Q  284 gtgttttttgttgggagaagagcaattttc 313  Q
    ||||||||||||||||||||||||||||||    
T  52073299 gtgttttttgttgggagaagagcaattttc 52073270  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 286 - 314
Target Start/End: Complemental strand, 1505570 - 1505542
Alignment:
Q  286 gttttttgttgggagaagagcaattttcc 314  Q
    |||||||||||||||||||||||||||||    
T  1505570 gttttttgttgggagaagagcaattttcc 1505542  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 287 - 315
Target Start/End: Original strand, 23475762 - 23475790
Alignment:
Q  287 ttttttgttgggagaagagcaattttcca 315  Q
    |||||||||||||||||||||||||||||    
T  23475762 ttttttgttgggagaagagcaattttcca 23475790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 287 - 315
Target Start/End: Original strand, 23534175 - 23534203
Alignment:
Q  287 ttttttgttgggagaagagcaattttcca 315  Q
    |||||||||||||||||||||||||||||    
T  23534175 ttttttgttgggagaagagcaattttcca 23534203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 318
Target Start/End: Original strand, 33859474 - 33859510
Alignment:
Q  282 gagtgttttttgttgggagaagagcaattttccacaa 318  Q
    ||||| |||||||||||||||||||||||||| ||||    
T  33859474 gagtggtttttgttgggagaagagcaattttcaacaa 33859510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 318
Target Start/End: Original strand, 25562580 - 25562616
Alignment:
Q  282 gagtgttttttgttgggagaagagcaattttccacaa 318  Q
    ||||| |||||||||||||||||||||||||| ||||    
T  25562580 gagtggtttttgttgggagaagagcaattttcaacaa 25562616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 318
Target Start/End: Original strand, 26002031 - 26002067
Alignment:
Q  282 gagtgttttttgttgggagaagagcaattttccacaa 318  Q
    ||||| |||||||||||||||||||||||||| ||||    
T  26002031 gagtggtttttgttgggagaagagcaattttcaacaa 26002067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 286 - 318
Target Start/End: Original strand, 26102096 - 26102128
Alignment:
Q  286 gttttttgttgggagaagagcaattttccacaa 318  Q
    |||||||||||||||||||||||||||| ||||    
T  26102096 gttttttgttgggagaagagcaattttcaacaa 26102128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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