View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15079_low_4 (Length: 352)
Name: NF15079_low_4
Description: NF15079
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15079_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 4 - 334
Target Start/End: Original strand, 37193715 - 37194045
Alignment:
| Q |
4 |
atgtccaagaaaataaatgtattccttctcttagaggttttcaattgctgtgattttaccattattttgtatgcactttttacttatgagaccagaatgt |
103 |
Q |
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|||||| | |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
37193715 |
atgtcccaaaaaataaatgtattccttctcttagaggttttcaattgctgtttttttaccattatttcgtatgcactttttacttatgagaccagaatgt |
37193814 |
T |
|
| Q |
104 |
ccactcattttttgctattattaacatctacctaacaatccatctattgttgagaacattagatacatcccttatttatttacttatttatgttggtcta |
203 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37193815 |
ccactcattttttgctattattaacatctacctaacaatccatctattgatgagaacattagatacatcccttatttatttacttatttatgttggtcta |
37193914 |
T |
|
| Q |
204 |
gttatacacccctgtttaaaatgaacttgagatgtgaacaatgtcatgttagacatagttaagtaatagctgccttttactctttctctatattttatct |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37193915 |
gttatacacccctgtttaaaatgaacttgagatgtgaacaatgtcatgttagacatagttaagtaatagctgccttttactctttctctatattttatct |
37194014 |
T |
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| Q |
304 |
taacgactagaaatgtctgtgatgtacaatc |
334 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
37194015 |
taacgactagaaatgtctgtgatgtacaatc |
37194045 |
T |
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