View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15079_low_6 (Length: 231)
Name: NF15079_low_6
Description: NF15079
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15079_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 191; Significance: 1e-104; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 24296410 - 24296199
Alignment:
| Q |
1 |
caaggaaaacagaaaaaatgattgaataaatgtgccactctagtatctattttattgcaaagtggggacagatattgctacatacatgccaaaatgaaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24296410 |
caaggaaaacagaaaaaatgattgaataaatgtgccactctagtatctattttattgcaaagtggggacagatattgctacatacatgccaaaatgaaaa |
24296311 |
T |
|
| Q |
101 |
gcatgtgtacacattacaattaagcttagttaatgtgtgaaagaaatttacaaaacaactaaacgaggggcaatgattgtgaaaacgnnnnnnncagagt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
24296310 |
gcatgtgtacacattacaattaagcttagttaatgtgtgaaagaaatttacaaaacaactaaacgaggggcaatgattgtgaaaacgaaaaaaacagagt |
24296211 |
T |
|
| Q |
201 |
agtgaagcgaag |
212 |
Q |
| |
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|||||||||||| |
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| T |
24296210 |
agtgaagcgaag |
24296199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 91 - 212
Target Start/End: Original strand, 19623221 - 19623342
Alignment:
| Q |
91 |
aaaatgaaaagcatgtgtacacattacaattaagcttagttaatgtgtgaaagaaatttacaaaacaactaaacgaggggcaatgattgtgaaaacgnnn |
190 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19623221 |
aaaatgaaaagcatgtgtacacattacaattaagcttagttaatgtgtgaaagaaatttacaaaacaactaaacgaggggcaatgattgtgaaaacgaaa |
19623320 |
T |
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| Q |
191 |
nnnncagagtagtgaagcgaag |
212 |
Q |
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|||||||||||||||||| |
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| T |
19623321 |
aaaacagagtagtgaagcgaag |
19623342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 19622850 - 19622941
Alignment:
| Q |
1 |
caaggaaaacagaaaaaatgattgaataaatgtgccactctagtatctattttattgcaaagtggggacagatattgctacatacatgccaa |
92 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19622850 |
caaggaaaacagaaaaaatgattgaataaatgtgccactctagtatctattttattgcaaagtggggacagatattgctacatacatgccaa |
19622941 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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