View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1507_high_11 (Length: 507)
Name: NF1507_high_11
Description: NF1507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1507_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 264; Significance: 1e-147; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 127 - 488
Target Start/End: Original strand, 2017625 - 2017993
Alignment:
| Q |
127 |
cacaataagcgttcttaacaaaatgcatgcatgcaccatattaatctcgtcgaggcagatcatcatcatcaaccattgatttcgcggaatgtgaatggnn |
226 |
Q |
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| T |
2017625 |
cacaataagcgttcttaacaaaatgcatgcatgcaccatattaatcgcgtcgcggcagatcatcatcatcaaccattgatttcgcggaatgtgaatgaaa |
2017724 |
T |
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| Q |
227 |
nnnnnnntgtgttggaactgagaatgtttttgttatattttgagatacaaaatgttaatatttgatgaacaaataatttcgtaatttagggatgaaatgt |
326 |
Q |
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| T |
2017725 |
aaaaaaaagtgttggaactgagaatgtttttgttatattttgagatacaaaatgttaatatttgaggaagaaataatttcgtaatttagggatgaaatgt |
2017824 |
T |
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| Q |
327 |
gagttttgtgacaaagtgttgtcattcaatgttgtctaaggcg-------gaatatagccgatggttaaaaatcatctatacaaacacgccattgcagtc |
419 |
Q |
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| T |
2017825 |
gagttttgtgacaaagtgttgtcaatcaatgttgtctatggcggatggcagaatatagccgatggttaaaaatcctctatacaaacacgccattgcagcc |
2017924 |
T |
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| Q |
420 |
tatggcactgcgatgatgggcattccttcacaaatgcccgccatggtggtgccaagaccaccatttagt |
488 |
Q |
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| T |
2017925 |
tatgacactgcgatgatgggcattccttcccaaatgcccgccatggtggtgccacgaccaccatttagt |
2017993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 7 - 132
Target Start/End: Original strand, 2017189 - 2017324
Alignment:
| Q |
7 |
gcagcacagaactcaactttcctaaaaacgtcgccggag----------ttgatcatcggccgccaagaactctccatccaggttattctctatcatttt |
96 |
Q |
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| T |
2017189 |
gcagcacagaactcaacttccctgaaaacgtcgccggagcacgacgtagttgatcatcggacgccaagaactctccatccaggttattgtctatcatttt |
2017288 |
T |
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| Q |
97 |
ttcggattcaattccaccgcaaattgcggccacaat |
132 |
Q |
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| T |
2017289 |
ttcggattcaattccaccgcaaattgcgggcacaat |
2017324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 366 - 454
Target Start/End: Original strand, 2020346 - 2020434
Alignment:
| Q |
366 |
ggcggaatatagccgatggttaaaaatcatctatacaaacacgccattgcagtctatggcactgcgatgatgggcattccttcacaaat |
454 |
Q |
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| T |
2020346 |
ggcggagtatagctgatggttaaaaatccgctatataaacaagccattgcagcctatggcaccgtgacgacaggcattccttcacaaat |
2020434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 245 - 291
Target Start/End: Original strand, 2020115 - 2020161
Alignment:
| Q |
245 |
tgagaatgtttttgttatattttgagatacaaaatgttaatatttga |
291 |
Q |
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| T |
2020115 |
tgagaatgtttttgttatattttggggtaaaaaatgttaatatttga |
2020161 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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