View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1507_high_17 (Length: 451)

Name: NF1507_high_17
Description: NF1507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1507_high_17
NF1507_high_17
[»] chr2 (4 HSPs)
chr2 (1-436)||(43880967-43881400)
chr2 (385-427)||(15572062-15572104)
chr2 (236-320)||(15571896-15571980)
chr2 (58-121)||(29065299-29065362)
[»] chr5 (4 HSPs)
chr5 (1-176)||(11239860-11240035)
chr5 (58-168)||(22278234-22278344)
chr5 (187-243)||(11240082-11240138)
chr5 (248-326)||(22278485-22278563)
[»] scaffold1067 (3 HSPs)
scaffold1067 (77-180)||(267-370)
scaffold1067 (236-323)||(64-151)
scaffold1067 (180-245)||(160-225)
[»] chr4 (6 HSPs)
chr4 (77-180)||(13737800-13737903)
chr4 (385-427)||(13737476-13737518)
chr4 (385-427)||(13739543-13739585)
chr4 (236-320)||(13737600-13737684)
chr4 (236-320)||(13739667-13739751)
chr4 (180-245)||(13737693-13737758)
[»] chr6 (3 HSPs)
chr6 (59-165)||(7672061-7672167)
chr6 (58-168)||(24026682-24026792)
chr6 (237-326)||(24026463-24026552)
[»] scaffold0604 (2 HSPs)
scaffold0604 (225-326)||(8208-8309)
scaffold0604 (59-168)||(8443-8552)
[»] chr1 (4 HSPs)
chr1 (59-129)||(17792695-17792765)
chr1 (399-436)||(48735629-48735666)
chr1 (63-180)||(27051386-27051503)
chr1 (231-285)||(27051613-27051667)
[»] chr7 (1 HSPs)
chr7 (58-167)||(13924758-13924867)


Alignment Details
Target: chr2 (Bit Score: 401; Significance: 0; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 1 - 436
Target Start/End: Original strand, 43880967 - 43881400
Alignment:
Q  1 atgaatgattaaattcttggatgagaatctagaggtacttaataaagctaaggttagtgaattgtaggtgtcttccacatcttcatccgaggaacataga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43880967 atgaatgattaaattcttggatgagaatctagaggtacttaataaagttaaggttagtgaattgtaggtgtcttccacatcttcatccgaggaacataga 43881066  T
Q  101 acactctccaaacaagagctactgcccaagtcttgtgcaacataacatgcaaaataacttagtaattggcaaacctcggaaaataatttagacaataatg 200  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43881067 acactctccgaacaagagctactgcccaagtcttgtgcaacataacatgcaaaataacttagtaattggcaaacctcggaaaataatttagacaataatg 43881166  T
Q  201 taatgactttaacatgcctccgaaccttcaccagttatgttgcttacatttgaaacttgaaaaatttatagaatttcatgaatatctattttgctgttcg 300  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||     
T  43881167 taatgactttaacatacctccgaaccttcaccagttatgttgcttacatttgaaacttcaaaaatttatagaatttcatgaatatctattttgctgttca 43881266  T
Q  301 taatacatagatatagtgaattagacttcacactcataaaaagcaaccagtgcaggaccatgaataacacaaagtcgggtttattttctttctttcaata 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  43881267 taatacatagatatagtgaattagacttcacactcataaaaagcaac--gtgcaggaccatggataacacaaagtcgggtttattttctttctttcaata 43881364  T
Q  401 tgctataatctttctatacatgtcaataatctaact 436  Q
    ||||||||||||||||||||||||||||||||||||    
T  43881365 tgctataatctttctatacatgtcaataatctaact 43881400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 385 - 427
Target Start/End: Original strand, 15572062 - 15572104
Alignment:
Q  385 tttctttctttcaatatgctataatctttctatacatgtcaat 427  Q
    |||||||||||||||||||||||||| ||||||||||||||||    
T  15572062 tttctttctttcaatatgctataatcgttctatacatgtcaat 15572104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 236 - 320
Target Start/End: Original strand, 15571896 - 15571980
Alignment:
Q  236 tatgttgcttacatttgaaacttgaaaaatttatagaatttcatgaatatctattttgctgttcgtaatacatagatatagtgaa 320  Q
    ||||||||||| ||||| || |   ||||||||||| |||||||||||||| ||||| | |||| ||||||||| ||||| ||||    
T  15571896 tatgttgcttaaatttggaattatgaaaatttataggatttcatgaatatccattttccagttcataatacatacatatattgaa 15571980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 58 - 121
Target Start/End: Original strand, 29065299 - 29065362
Alignment:
Q  58 tgaattgtaggtgtcttccacatcttcatccgaggaacatagaacactctccaaacaagagcta 121  Q
    |||| ||||| ||||||| |||||||||||||||| ||||| | |||||||  |||||||||||    
T  29065299 tgaagtgtagatgtcttcgacatcttcatccgaggtacatacatcactctcagaacaagagcta 29065362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 140; Significance: 4e-73; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 11239860 - 11240035
Alignment:
Q  1 atgaatgattaaattcttggatgagaatctagaggtacttaataaagctaaggttagtgaattgtaggtgtcttccacatcttcatccgaggaacataga 100  Q
    ||||||||| ||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11239860 atgaatgatcaaattcttgtatgagaatctagaggtacttaatgaagttaaggttagtgaattgtaggtgtcttccacatcttcatccgaggaacataga 11239959  T
Q  101 acactctccaaacaagagctactgcccaagtcttgtgcaacataacatgcaaaataacttagtaattggcaaacct 176  Q
    ||||||| | |||||||||||||||||||||| |||||||||||||||||||||||||||||||| || |||||||    
T  11239960 acactcttcgaacaagagctactgcccaagtcctgtgcaacataacatgcaaaataacttagtaactgccaaacct 11240035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 58 - 168
Target Start/End: Original strand, 22278234 - 22278344
Alignment:
Q  58 tgaattgtaggtgtcttccacatcttcatccgaggaacatagaacactctccaaacaagagctactgcccaagtcttgtgcaacataacatgcaaaataa 157  Q
    ||||||| | |||||||||  ||| |||||||||||||| | |||||||||| ||||||||| |||  |||||||  ||  || ||||||||  ||||||    
T  22278234 tgaattgaacgtgtcttccgtatcatcatccgaggaacacacaacactctccgaacaagagccactatccaagtccagtagaatataacatggtaaataa 22278333  T
Q  158 cttagtaattg 168  Q
    |||||||||||    
T  22278334 cttagtaattg 22278344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 187 - 243
Target Start/End: Original strand, 11240082 - 11240138
Alignment:
Q  187 tttagacaataatgtaatgactttaacatgcctccgaaccttcaccagttatgttgc 243  Q
    |||||||||||||||||| |||| ||||| |||| |||||||| |||| ||||||||    
T  11240082 tttagacaataatgtaatcacttgaacatacctctgaaccttccccagctatgttgc 11240138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 248 - 326
Target Start/End: Original strand, 22278485 - 22278563
Alignment:
Q  248 atttgaaacttgaaaaatttatagaatttcatgaatatctattttgctgttcgtaatacatagatatagtgaattagac 326  Q
    ||||||||||||||||||||  |||||||||   ||||| |||||| ||||| |||| |||| ||| | ||||||||||    
T  22278485 atttgaaacttgaaaaatttcaagaatttcactcatatccattttgatgttcctaatgcatacataaattgaattagac 22278563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1067 (Bit Score: 64; Significance: 8e-28; HSPs: 3)
Name: scaffold1067
Description:

Target: scaffold1067; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 77 - 180
Target Start/End: Complemental strand, 370 - 267
Alignment:
Q  77 acatcttcatccgaggaacatagaacactctccaaacaagagctactgcccaagtcttgtgcaacataacatgcaaaataacttagtaattggcaaacct 176  Q
    |||||||||||||||||||||||||||| |||| ||||| || || |||||||||| ||| ||| |||| |||||||||||||||||||||| |||||||    
T  370 acatcttcatccgaggaacatagaacaccctccgaacaatagttattgcccaagtcctgtacaatataaaatgcaaaataacttagtaattgccaaacct 271  T
Q  177 cgga 180  Q
    ||||    
T  270 cgga 267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1067; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 236 - 323
Target Start/End: Complemental strand, 151 - 64
Alignment:
Q  236 tatgttgcttacatttgaaacttgaaaaatttatagaatttcatgaatatctattttgctgttcgtaatacatagatatagtgaatta 323  Q
    ||||||||||| ||||| || |   ||||||| ||| |||||||||||||| ||||| | |||| ||||||||| ||||| |||||||    
T  151 tatgttgcttaaatttggaattatgaaaatttctaggatttcatgaatatccattttccagttcataatacatacatatattgaatta 64  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1067; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 180 - 245
Target Start/End: Complemental strand, 225 - 160
Alignment:
Q  180 aaaataatttagacaataatgtaatgactttaacatgcctccgaaccttcaccagttatgttgctt 245  Q
    ||||||||||| |||||||||||||||||| || || |||| |||| | | ||||| |||||||||    
T  225 aaaataatttacacaataatgtaatgacttcaagatacctctgaacttcccccagtaatgttgctt 160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 8e-28; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 77 - 180
Target Start/End: Complemental strand, 13737903 - 13737800
Alignment:
Q  77 acatcttcatccgaggaacatagaacactctccaaacaagagctactgcccaagtcttgtgcaacataacatgcaaaataacttagtaattggcaaacct 176  Q
    |||||||||||||||||||||||||||| |||| ||||| || || |||||||||| ||| ||| |||| |||||||||||||||||||||| |||||||    
T  13737903 acatcttcatccgaggaacatagaacaccctccgaacaatagttattgcccaagtcctgtacaatataaaatgcaaaataacttagtaattgccaaacct 13737804  T
Q  177 cgga 180  Q
    ||||    
T  13737803 cgga 13737800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 385 - 427
Target Start/End: Complemental strand, 13737518 - 13737476
Alignment:
Q  385 tttctttctttcaatatgctataatctttctatacatgtcaat 427  Q
    |||||||||||||||||||||||||| ||||||||||||||||    
T  13737518 tttctttctttcaatatgctataatcgttctatacatgtcaat 13737476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 385 - 427
Target Start/End: Complemental strand, 13739585 - 13739543
Alignment:
Q  385 tttctttctttcaatatgctataatctttctatacatgtcaat 427  Q
    |||||||||||||||||||||||||| ||||||||||||||||    
T  13739585 tttctttctttcaatatgctataatcgttctatacatgtcaat 13739543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 236 - 320
Target Start/End: Complemental strand, 13737684 - 13737600
Alignment:
Q  236 tatgttgcttacatttgaaacttgaaaaatttatagaatttcatgaatatctattttgctgttcgtaatacatagatatagtgaa 320  Q
    ||||||||||| ||||| || |   ||||||||||| |||||||||||||| ||||| | |||| ||||||||| ||||| ||||    
T  13737684 tatgttgcttaaatttggaattatgaaaatttataggatttcatgaatatccattttccagttcataatacatacatatattgaa 13737600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 236 - 320
Target Start/End: Complemental strand, 13739751 - 13739667
Alignment:
Q  236 tatgttgcttacatttgaaacttgaaaaatttatagaatttcatgaatatctattttgctgttcgtaatacatagatatagtgaa 320  Q
    ||||||||||| ||||| || |   ||||||||||| |||||||||||||| ||||| | |||| ||||||||| ||||| ||||    
T  13739751 tatgttgcttaaatttggaattatgaaaatttataggatttcatgaatatccattttccagttcataatacatacatatattgaa 13739667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 180 - 245
Target Start/End: Complemental strand, 13737758 - 13737693
Alignment:
Q  180 aaaataatttagacaataatgtaatgactttaacatgcctccgaaccttcaccagttatgttgctt 245  Q
    ||||||||||| |||||||||||||||||| || || |||| |||| | | ||||| |||||||||    
T  13737758 aaaataatttacacaataatgtaatgacttcaagatacctctgaacttcccccagtaatgttgctt 13737693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 8e-25; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 59 - 165
Target Start/End: Original strand, 7672061 - 7672167
Alignment:
Q  59 gaattgtaggtgtcttccacatcttcatccgaggaacatagaacactctccaaacaagagctactgcccaagtcttgtgcaacataacatgcaaaataac 158  Q
    |||||||| |||||||||| ||  ||||| |||||||||| |||||||||| |||||||||||||||||| ||  ||| ||| |||||||||||||||||    
T  7672061 gaattgtacgtgtcttccatatgatcatctgaggaacatacaacactctccgaacaagagctactgcccatgttctgtacaatataacatgcaaaataac 7672160  T
Q  159 ttagtaa 165  Q
    |||||||    
T  7672161 ttagtaa 7672167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 58 - 168
Target Start/End: Complemental strand, 24026792 - 24026682
Alignment:
Q  58 tgaattgtaggtgtcttccacatcttcatccgaggaacatagaacactctccaaacaagagctactgcccaagtcttgtgcaacataacatgcaaaataa 157  Q
    ||||||| | |||||||||   || |||||||||||||| | |||||||||| ||||||||| |||  ||||||| |||  || ||||||||  ||||||    
T  24026792 tgaattgaacgtgtcttccgtttcatcatccgaggaacacacaacactctccgaacaagagccactatccaagtcctgtagaatataacatggtaaataa 24026693  T
Q  158 cttagtaattg 168  Q
    |||||||||||    
T  24026692 cttagtaattg 24026682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 326
Target Start/End: Complemental strand, 24026552 - 24026463
Alignment:
Q  237 atgttgcttacatttgaaacttgaaaaatttatagaatttcatgaatatctattttgctgttcgtaatacatagatatagtgaattagac 326  Q
    |||||||  |||||||||||||| |||||||  |||||||||   ||||| |||||| ||||| |||| |||| ||| | ||||||||||    
T  24026552 atgttgcccacatttgaaacttgtaaaatttcaagaatttcactcatatccattttgatgttcctaatgcatacataaattgaattagac 24026463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0604 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: scaffold0604
Description:

Target: scaffold0604; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 225 - 326
Target Start/End: Complemental strand, 8309 - 8208
Alignment:
Q  225 ccttcaccagttatgttgcttacatttgaaacttgaaaaatttatagaatttcatgaatatctattttgctgttcgtaatacatagatatagtgaattag 324  Q
    ||||| |||||||||||||| ||||||||||||||||||||||  |||||||||  |||||| |||||| ||||| |||| |||| ||| | ||||||||    
T  8309 ccttccccagttatgttgctcacatttgaaacttgaaaaatttcaagaatttcactaatatccattttgatgttcctaatgcatacataaattgaattag 8210  T
Q  325 ac 326  Q
    ||    
T  8209 ac 8208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0604; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 59 - 168
Target Start/End: Complemental strand, 8552 - 8443
Alignment:
Q  59 gaattgtaggtgtcttccacatcttcatccgaggaacatagaacactctccaaacaagagctactgcccaagtcttgtgcaacataacatgcaaaataac 158  Q
    ||||| || |||||||||| ||| |||||||||||||| | |||||||||| ||||||||| | |  ||||||| |||  || ||||||||| |||||||    
T  8552 gaattctacgtgtcttccatatcatcatccgaggaacacataacactctccgaacaagagccattatccaagtcctgtagaatataacatgctaaataac 8453  T
Q  159 ttagtaattg 168  Q
    ||||||||||    
T  8452 ttagtaattg 8443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 59 - 129
Target Start/End: Original strand, 17792695 - 17792765
Alignment:
Q  59 gaattgtaggtgtcttccacatcttcatccgaggaacatagaacactctccaaacaagagctactgcccaa 129  Q
    |||||||| |||||||||||||||||||  |||||||||||| |||||||| ||||| | ||||| |||||    
T  17792695 gaattgtacgtgtcttccacatcttcatatgaggaacatagaccactctcctaacaaaaactacttcccaa 17792765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 399 - 436
Target Start/End: Complemental strand, 48735666 - 48735629
Alignment:
Q  399 tatgctataatctttctatacatgtcaataatctaact 436  Q
    ||||||||||||||||||||||||||||||||||||||    
T  48735666 tatgctataatctttctatacatgtcaataatctaact 48735629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 63 - 180
Target Start/End: Original strand, 27051386 - 27051503
Alignment:
Q  63 tgtaggtgtcttccacatcttcatccgaggaacatagaacactctccaaacaagagctactgcccaagtcttgtgcaacataacatgcaaaataacttag 162  Q
    ||||| ||||||| ||||||||||| |||| ||||| | |||||||  ||||||||||| || ||| ||| ||  ||| | || |||| |||||||||||    
T  27051386 tgtagatgtcttcaacatcttcatctgagggacatacatcactctctgaacaagagctattgtccatgtcctgcacaataaaaaatgctaaataacttag 27051485  T
Q  163 taattggcaaacctcgga 180  Q
    |||||  ||| |||||||    
T  27051486 taatttacaatcctcgga 27051503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 231 - 285
Target Start/End: Original strand, 27051613 - 27051667
Alignment:
Q  231 ccagttatgttgcttacatttgaaacttgaaaaatttatagaatttcatgaatat 285  Q
    |||||||||| ||||||||| | || || |||||||| |||||||||||||||||    
T  27051613 ccagttatgtcgcttacattaggaatttcaaaaatttctagaatttcatgaatat 27051667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 58 - 167
Target Start/End: Original strand, 13924758 - 13924867
Alignment:
Q  58 tgaattgtaggtgtcttccacatcttcatccgaggaacatagaacactctccaaacaagagctactgcccaagtcttgtgcaacataacatgcaaaataa 157  Q
    |||| ||||| | ||||| |||||||||||||||| ||||| | |||||||  ||||||||||| || |||  |||||  ||| | || ||||||| |||    
T  13924758 tgaagtgtagatttcttcgacatcttcatccgaggtacatacatcactctctgaacaagagctattgtccatctcttgcacaataaaaaatgcaaattaa 13924857  T
Q  158 cttagtaatt 167  Q
    ||| ||||||    
T  13924858 cttggtaatt 13924867  T

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