View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1507_high_18 (Length: 447)
Name: NF1507_high_18
Description: NF1507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1507_high_18 |
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Alignment Details
Target: chr7 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 1 - 376
Target Start/End: Complemental strand, 6488952 - 6488577
Alignment:
| Q |
1 |
cgaaaaaagtggcacgtgtggtagccatagcaaggttacttaatggattattggtctgcatgagatcagacctcaacaaccatgtaccgaggtcaaccat |
100 |
Q |
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| T |
6488952 |
cgaaaaaagtggcacgtgtggtagccatagcaaggttacttaatggattattggtctgcatgagatcagacctcaacaaccatgtaccgaggtcaaccat |
6488853 |
T |
|
| Q |
101 |
tggctcgaccgcggtagcatggaggacagcagttgatttgagaagttttttggttgggacgtgcgaaaagagtttttcgacgtcgtggaagtcgagattg |
200 |
Q |
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| T |
6488852 |
tggctcgaccgcggtagcatggaggacagcagttgatttgagaagttttttggttgggacgtgcgaaaagagtttttcgacgtcgtggaagtcgagattg |
6488753 |
T |
|
| Q |
201 |
gcgtcgggagggaggatggttgttaccgatgatggcagtttttggtctaaaatattagacgcaggagcgacagcgggcgaggtgagggcaggttggaacg |
300 |
Q |
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| T |
6488752 |
gcgtcgggagggaggatggttgttaccgatgatggcagtttttggtctaaaatattagacgcaggagcgacagcgggcgaggtgagggcaggttggaacg |
6488653 |
T |
|
| Q |
301 |
gttttgtggcagtgttgtaacggagtttccttaggattcttggtgggataactctggtggccatcaaccggtcaaa |
376 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6488652 |
gttttgtggcagtgttgtaacggagtttccttaggattcttggtgggataactctggtggccatcaaccggtcaaa |
6488577 |
T |
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