View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1507_high_2 (Length: 671)

Name: NF1507_high_2
Description: NF1507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1507_high_2
NF1507_high_2
[»] chr3 (9 HSPs)
chr3 (16-551)||(7050659-7051194)
chr3 (17-390)||(32558484-32558863)
chr3 (17-384)||(52717122-52717496)
chr3 (475-538)||(30174410-30174474)
chr3 (621-661)||(7051264-7051304)
chr3 (340-384)||(53343105-53343149)
chr3 (340-386)||(25694866-25694912)
chr3 (334-383)||(45781551-45781600)
chr3 (348-384)||(32558218-32558254)
[»] chr1 (11 HSPs)
chr1 (17-357)||(8641339-8641684)
chr1 (477-551)||(11398268-11398344)
chr1 (139-241)||(45500135-45500230)
chr1 (447-548)||(18136414-18136515)
chr1 (467-530)||(52935170-52935234)
chr1 (467-530)||(52942805-52942869)
chr1 (447-530)||(52946193-52946277)
chr1 (477-516)||(31230366-31230405)
chr1 (304-375)||(45499984-45500055)
chr1 (621-659)||(11398162-11398200)
chr1 (353-385)||(8641918-8641950)
[»] chr7 (3 HSPs)
chr7 (447-551)||(47762053-47762158)
chr7 (474-551)||(20290674-20290752)
chr7 (340-385)||(22297900-22297945)
[»] chr4 (6 HSPs)
chr4 (469-551)||(17225242-17225324)
chr4 (469-551)||(5373884-5373966)
chr4 (445-530)||(40225492-40225578)
chr4 (334-382)||(51282091-51282139)
chr4 (621-659)||(17225142-17225180)
chr4 (340-382)||(21838253-21838295)
[»] chr2 (3 HSPs)
chr2 (467-551)||(42735280-42735367)
chr2 (334-384)||(1521649-1521699)
chr2 (334-384)||(1522391-1522441)
[»] chr8 (3 HSPs)
chr8 (334-384)||(14707026-14707076)
chr8 (340-389)||(40600661-40600710)
chr8 (337-377)||(35348408-35348448)
[»] chr5 (5 HSPs)
chr5 (334-384)||(6697367-6697417)
chr5 (447-548)||(10548172-10548274)
chr5 (335-384)||(6695787-6695836)
chr5 (340-384)||(38558946-38558990)
chr5 (469-551)||(20319530-20319612)
[»] chr6 (1 HSPs)
chr6 (334-384)||(7683513-7683563)
[»] scaffold0590 (1 HSPs)
scaffold0590 (447-548)||(5017-5121)


Alignment Details
Target: chr3 (Bit Score: 503; Significance: 0; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 503; E-Value: 0
Query Start/End: Original strand, 16 - 551
Target Start/End: Original strand, 7050659 - 7051194
Alignment:
Q  16 aaaatggcaataaaaggaattaggttgatgccataagtcacgtaacccttttgaatacaataaggaaacaaaaatgttggatatggggtgaataagaatt 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  7050659 aaaatggcaataaaaggaattaggttgatgccataagtcacgtaacccttctgaatacaataaggaaacaaaaatgttggatacggggtgaataaaaatt 7050758  T
Q  116 atattgtctggaattagaagatgaaaaagaagaaacatattttatgtgtgtgttttttattgttgggaaacaagaatgtgaaatagttggtgaggtacca 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7050759 atattgtctggaattagaagatgaaaaagaagaaacatattttatgtgtgtgttttttattgttgggaaacaagaatgtgaaatagttggtgaggtacca 7050858  T
Q  216 ttaatggaaaagtggaaggatgaggccagcgagagggaggaagagggnnnnnnntgatctagtgtaggtggtagaatttacgagtgtgatgaatccaatg 315  Q
    |||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||    
T  7050859 ttaatggaaaagtggaaggatgaggccagcgagagggaggaagagggaaaaaaatgatctagtgtaggtggtagaatttacgagtgtgatgaatccaatg 7050958  T
Q  316 actctcaactattgctcaaaatgatccaccgatgaatcacttatttgatggttcaccctagaatccaccatttaatcaagtcgattcaagaacgaaacaa 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7050959 actctcaactattgctcaaaatgatccaccgatgaatcacttatttgatggttcaccctagaatccaccatttaatcaagtcgattcaagaacgaaacaa 7051058  T
Q  416 ttacaaatttgatgtgacatgtgaggaaggttgtaatgagtcatggaactggaaggggtaatatgggaaaaaggaatatggacccttataaataagagaa 515  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7051059 ttacaaatttgatgtgacatgtgaggaaggttgtaatgagtcatggaactggaaggggtaatatgggaaaaaggaatatggacccttataaataagagaa 7051158  T
Q  516 atccaaggaaataaggatggaaaatatgtgatgaaa 551  Q
    ||||||||||||||||||||||||||||||||||||    
T  7051159 atccaaggaaataaggatggaaaatatgtgatgaaa 7051194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 17 - 390
Target Start/End: Original strand, 32558484 - 32558863
Alignment:
Q  17 aaatggcaataaaaggaattaggttgatgccataagtcacgtaacccttttgaatacaataaggaaacaaaaatgttggatatggggtgaataagaatta 116  Q
    ||||| |||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||    
T  32558484 aaatgacaataaaaggaattaggttgatgcaataagtcacgtaacccttctgaatacaataaggaaacaaaaatgttggatacggggtgaataagaatta 32558583  T
Q  117 tattgtctggaattagaagatgaaaaagaagaaacatattttatgtgtgtgttttttattgttgggaaacaagaatgtgaaatagttggtgaggtaccat 216  Q
    ||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32558584 tattgtctgaaattagaagatgaaaaagaagaaatatattttatgtgtgtgttttttattgttgggaaacaagaatgtgaaatagttggtgaggtaccat 32558683  T
Q  217 taatggaaaagtggaaggatgaggccagcgagagggaggaagagggnnnnnnntgatctagtgtagg-------tggtagaatttacgagtgtgatgaat 309  Q
    |||||||||||||||||||||| |||||||||||||||||||||||       ||||||||||||||       |||||||||||||||||| |||||||    
T  32558684 taatggaaaagtggaaggatgaagccagcgagagggaggaagaggg-aaaaaatgatctagtgtaggtggtgtatggtagaatttacgagtgcgatgaat 32558782  T
Q  310 ccaatgactctcaactattgctcaaaatgatccaccgatgaatcacttatttgatggttcaccctagaatccaccatttaa 390  Q
    |||||| |||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |||||||||||||||    
T  32558783 ccaatggctctcaactattgctcaaaatggtccaccggtgaatcacttatttgatggttcaccctggaatccaccatttaa 32558863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 17 - 384
Target Start/End: Complemental strand, 52717496 - 52717122
Alignment:
Q  17 aaatggcaataaaaggaattaggttgatgccataagtcacgtaacccttttgaatacaataaggaaacaaaaatgttggatatggggtgaataagaatta 116  Q
    ||||||||||||||||||||||||||||| ||||| |||| |||||||| ||||||||||||||||||||||||||| |||| | |||||||||||||||    
T  52717496 aaatggcaataaaaggaattaggttgatgtcataaatcacttaacccttctgaatacaataaggaaacaaaaatgttagatacgaggtgaataagaatta 52717397  T
Q  117 tattgtctggaattagaagatgaaaaagaagaaacatattttatgtgtgtgttttttattgttgggaaacaagaatgtgaaatagttggtgaggtaccat 216  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  52717396 tattgtctggaattagaagatgaaaaagaagaaatatattttatgtgtgtgttttttattgttgggaaacatgaatgtgaaatagttggtgaggtaccat 52717297  T
Q  217 taatggaaaagtggaaggatgaggccagcgag-agggaggaagagggnnnnnnntgatctagtgtagg-------tggtagaatttacgagtgtgatgaa 308  Q
    ||||| |||||||||||||||||||||||||| ||||||||||||||       ||||||||||||||       |||||| |||||| | |||||||||    
T  52717296 taatgcaaaagtggaaggatgaggccagcgagaagggaggaagaggg-aaaaaatgatctagtgtaggtggtgtatggtaggatttacaaatgtgatgaa 52717198  T
Q  309 tccaatgactctcaactattgctcaaaatgatccaccgatgaatcacttatttgatggttcaccctagaatccacc 384  Q
    ||||||| |||||||||||||||||||||| ||||||| ||||||| |||||||||||||||||||||||||||||    
T  52717197 tccaatggctctcaactattgctcaaaatggtccaccggtgaatcagttatttgatggttcaccctagaatccacc 52717122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 475 - 538
Target Start/End: Complemental strand, 30174474 - 30174410
Alignment:
Q  475 aatatgggaaaaaggaatatggacccttataaataagag-aaatccaaggaaataaggatggaaa 538  Q
    |||||||||| |||||||||||| ||||||||||||||| ||| ||||||||||||| |||||||    
T  30174474 aatatgggaataaggaatatggatccttataaataagagaaaagccaaggaaataagcatggaaa 30174410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 621 - 661
Target Start/End: Original strand, 7051264 - 7051304
Alignment:
Q  621 attgttattttacttgtaaattggttgttattcgtcctttg 661  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  7051264 attgttattttacttgcaaattggttgttattcgtcctttg 7051304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 340 - 384
Target Start/End: Complemental strand, 53343149 - 53343105
Alignment:
Q  340 tccaccgatgaatcacttatttgatggttcaccctagaatccacc 384  Q
    |||||||||||| |||||||||||||||||| |||||||||||||    
T  53343149 tccaccgatgaaccacttatttgatggttcatcctagaatccacc 53343105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 340 - 386
Target Start/End: Original strand, 25694866 - 25694912
Alignment:
Q  340 tccaccgatgaatcacttatttgatggttcaccctagaatccaccat 386  Q
    |||||||||||| ||||||| ||||||||||| ||||||||||||||    
T  25694866 tccaccgatgaaccacttatatgatggttcactctagaatccaccat 25694912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 334 - 383
Target Start/End: Complemental strand, 45781600 - 45781551
Alignment:
Q  334 aaatgatccaccgatgaatcacttatttgatggttcaccctagaatccac 383  Q
    ||||| ||||||| |||| || || |||||||||||||||||||||||||    
T  45781600 aaatggtccaccggtgaaccatttgtttgatggttcaccctagaatccac 45781551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 348 - 384
Target Start/End: Complemental strand, 32558254 - 32558218
Alignment:
Q  348 tgaatcacttatttgatggttcaccctagaatccacc 384  Q
    |||| |||||| |||||||||||||||||||||||||    
T  32558254 tgaaccacttagttgatggttcaccctagaatccacc 32558218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 17 - 357
Target Start/End: Complemental strand, 8641684 - 8641339
Alignment:
Q  17 aaatggcaataaaaggaattaggttgatgccataagtcacgtaacccttttgaatacaataaggaaacaaaaatgttggatatggggtgaataagaatta 116  Q
    |||||||||||||||||||||| |||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  8641684 aaatggcaataaaaggaattagattgatgtcataagtcacgtaacccttctgaatacaataaggaaacaaaaatgttggatatagggtgaataagaatta 8641585  T
Q  117 tattgtctggaattagaagatgaaaaagaagaaacatattttatgtgtgtgttttttattgttgggaaacaagaatgtgaaatagttggtgaggtaccat 216  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||  ||    
T  8641584 tattgtctgaaattagaagatgaaaaagaagaaacatattttatgtgtgtgttttttattattgggaaacaagaatgtgaaatagttggtgaggta-tat 8641486  T
Q  217 taatggaaaagtggaaggatgaggccagcgagagggaggaagagggnnnnnnntgatctagtgtagg-------tggtagaatttacgagtgtgatgaat 309  Q
    |||||||||| |||||||||||||| ||| ||||||||||||||||       ||||||||||||||       |||||| |||||||||||||||||||    
T  8641485 taatggaaaaatggaaggatgaggctagcaagagggaggaagaggg-aaaaaatgatctagtgtaggtggtgtatggtaggatttacgagtgtgatgaat 8641387  T
Q  310 ccaatgactctcaactattgctcaaaatgatccaccgatgaatcactt 357  Q
    |||||| ||||||||||||||||||||||||||| || ||||||||||    
T  8641386 ccaatggctctcaactattgctcaaaatgatccatcggtgaatcactt 8641339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 477 - 551
Target Start/End: Complemental strand, 11398344 - 11398268
Alignment:
Q  477 tatgggaaaaaggaatatggacccttataaataagag-aaatccaaggaaataaggatgg-aaaatatgtgatgaaa 551  Q
    ||||| ||| ||||||||||||||||||||||| ||| ||| |||||||||||||||||| ||||||||||||||||    
T  11398344 tatggaaaataggaatatggacccttataaatatgagaaaagccaaggaaataaggatggaaaaatatgtgatgaaa 11398268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 139 - 241
Target Start/End: Complemental strand, 45500230 - 45500135
Alignment:
Q  139 aaaaagaagaaacatattttatgtgtgtgttttttattgttgggaaacaagaatgtgaaatagttggtgaggtaccattaatggaaaagtggaaggatga 238  Q
    |||||||||| ||||||||||||||||||| |||||||||||||||||||       ||| ||||||||| ||||||| |||||| ||||||||||| ||    
T  45500230 aaaaagaagagacatattttatgtgtgtgt-ttttattgttgggaaacaa------aaaagagttggtgatgtaccatcaatggagaagtggaaggaaga 45500138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 447 - 548
Target Start/End: Original strand, 18136414 - 18136515
Alignment:
Q  447 tgtaatgagtcatggaactggaaggggtaatatgggaaaaaggaatatggacccttataaata--agagaaatccaaggaaataaggatggaaaatatgt 544  Q
    ||||||||||| | ||  | ||||||| | ||||||||| |||||||||||||||||||||||  ||| ||| ||||||||||||| |||  ||||||||    
T  18136414 tgtaatgagtcttagagttagaaggggcattatgggaaataggaatatggacccttataaatatgagaaaaagccaaggaaataagcatg--aaatatgt 18136511  T
Q  545 gatg 548  Q
    ||||    
T  18136512 gatg 18136515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 467 - 530
Target Start/End: Original strand, 52935170 - 52935234
Alignment:
Q  467 gaaggggtaatatgggaaaaaggaatatggacccttataaataagag-aaatccaaggaaataag 530  Q
    ||||||| | ||||||||| ||||||||||||||||||||||| ||| ||| |||||||||||||    
T  52935170 gaaggggcattatgggaaataggaatatggacccttataaatatgagaaaagccaaggaaataag 52935234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 467 - 530
Target Start/End: Original strand, 52942805 - 52942869
Alignment:
Q  467 gaaggggtaatatgggaaaaaggaatatggacccttataaataagag-aaatccaaggaaataag 530  Q
    ||||||| | ||||||||| ||||||||||||||||||||||| ||| ||| |||||||||||||    
T  52942805 gaaggggcattatgggaaataggaatatggacccttataaatatgagaaaagccaaggaaataag 52942869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 447 - 530
Target Start/End: Original strand, 52946193 - 52946277
Alignment:
Q  447 tgtaatgagtcatggaactggaaggggtaatatgggaaaaaggaatatggacccttataaataagag-aaatccaaggaaataag 530  Q
    ||||||||||| | ||  | ||||||| | ||||||||| ||||||||||||||||||||||| ||| ||| |||||||||||||    
T  52946193 tgtaatgagtcttagagttagaaggggcattatgggaaataggaatatggacccttataaatatgagaaaagccaaggaaataag 52946277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 477 - 516
Target Start/End: Complemental strand, 31230405 - 31230366
Alignment:
Q  477 tatgggaaaaaggaatatggacccttataaataagagaaa 516  Q
    ||||||||| ||||||||||||||||||||||| ||||||    
T  31230405 tatgggaaataggaatatggacccttataaatatgagaaa 31230366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 304 - 375
Target Start/End: Complemental strand, 45500055 - 45499984
Alignment:
Q  304 atgaatccaatgactctcaactattgctcaaaatgatccaccgatgaatcacttatttgatggttcacccta 375  Q
    ||||||| |||| ||||||| |||| ||||   || ||||||| |||| |||||||||||||||||||||||    
T  45500055 atgaatctaatggctctcaattattactcacggtggtccaccggtgaaccacttatttgatggttcacccta 45499984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 621 - 659
Target Start/End: Complemental strand, 11398200 - 11398162
Alignment:
Q  621 attgttattttacttgtaaattggttgttattcgtcctt 659  Q
    |||||||||||||||| |||||||||||||||| |||||    
T  11398200 attgttattttacttgcaaattggttgttattcctcctt 11398162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 353 - 385
Target Start/End: Original strand, 8641918 - 8641950
Alignment:
Q  353 cacttatttgatggttcaccctagaatccacca 385  Q
    |||||| ||||||||||||||||||||||||||    
T  8641918 cacttagttgatggttcaccctagaatccacca 8641950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 3e-19; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 447 - 551
Target Start/End: Original strand, 47762053 - 47762158
Alignment:
Q  447 tgtaatgagtcatggaactggaaggggtaatatgggaaaaaggaatatggacccttataaataagag-aaatccaaggaaataaggatggaaaatatgtg 545  Q
    ||||||||||| | ||  | ||||||| | ||||| ||| ||||||||||||||||||||||| ||| ||| |||||||||||||||| |||||||||||    
T  47762053 tgtaatgagtcttagagttagaaggggcattatggaaaataggaatatggacccttataaatatgagaaaagccaaggaaataaggattgaaaatatgtg 47762152  T
Q  546 atgaaa 551  Q
    ||||||    
T  47762153 atgaaa 47762158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 474 - 551
Target Start/End: Complemental strand, 20290752 - 20290674
Alignment:
Q  474 taatatgggaaaaaggaatatggacccttataaataagagaaatccaaggaaataag-gatggaaaatatgtgatgaaa 551  Q
    |||||||| ||| | |||||||||||||||||||||||||||| ||||| |||||||  ||||||||||||||||||||    
T  20290752 taatatggtaaatatgaatatggacccttataaataagagaaagccaagcaaataagacatggaaaatatgtgatgaaa 20290674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 340 - 385
Target Start/End: Original strand, 22297900 - 22297945
Alignment:
Q  340 tccaccgatgaatcacttatttgatggttcaccctagaatccacca 385  Q
    |||||||||||| |||||| |||||||||||| |||||||||||||    
T  22297900 tccaccgatgaaccacttaattgatggttcactctagaatccacca 22297945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 469 - 551
Target Start/End: Complemental strand, 17225324 - 17225242
Alignment:
Q  469 aggggtaatatgggaaaaaggaatatggacccttataaataagagaaat-ccaaggaaataaggatggaaaatatgtgatgaaa 551  Q
    ||||| ||||||||||| || |||| ||||||||||||||||||||||  |||||||| |||| |||||| |||||||||||||    
T  17225324 aggggcaatatgggaaatagaaata-ggacccttataaataagagaaaagccaaggaagtaagcatggaagatatgtgatgaaa 17225242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 469 - 551
Target Start/End: Complemental strand, 5373966 - 5373884
Alignment:
Q  469 aggggtaatatgggaaaaaggaatatggacccttataaataagag-aaatccaaggaaataaggatggaaaatatgtgatgaaa 551  Q
    ||||| ||||||||||| || |||| ||||||||||||||||||| |||  |||||||||||| ||| ||||| ||||||||||    
T  5373966 aggggcaatatgggaaatagaaata-ggacccttataaataagagaaaagtcaaggaaataagcatgaaaaatgtgtgatgaaa 5373884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 445 - 530
Target Start/End: Complemental strand, 40225578 - 40225492
Alignment:
Q  445 gttgtaatgagtcatggaactggaaggggtaatatgggaaaaaggaatatggacccttataaataagag-aaatccaaggaaataag 530  Q
    ||||||||||||| | ||  | ||||||| | ||||||||| ||||||||||||||| ||||||| ||| ||| |||||||||||||    
T  40225578 gttgtaatgagtcttagagttagaaggggcattatgggaaataggaatatggaccctaataaatatgagaaaagccaaggaaataag 40225492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 334 - 382
Target Start/End: Original strand, 51282091 - 51282139
Alignment:
Q  334 aaatgatccaccgatgaatcacttatttgatggttcaccctagaatcca 382  Q
    ||||| ||||||| |||| ||||| ||||||||||||||||||||||||    
T  51282091 aaatggtccaccggtgaaccacttgtttgatggttcaccctagaatcca 51282139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 621 - 659
Target Start/End: Complemental strand, 17225180 - 17225142
Alignment:
Q  621 attgttattttacttgtaaattggttgttattcgtcctt 659  Q
    |||||||||||||||| |||||||||||||||| |||||    
T  17225180 attgttattttacttgcaaattggttgttattcctcctt 17225142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 340 - 382
Target Start/End: Original strand, 21838253 - 21838295
Alignment:
Q  340 tccaccgatgaatcacttatttgatggttcaccctagaatcca 382  Q
    |||||||||||| |||||| ||||||||||| |||||||||||    
T  21838253 tccaccgatgaaccacttaattgatggttcatcctagaatcca 21838295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 467 - 551
Target Start/End: Original strand, 42735280 - 42735367
Alignment:
Q  467 gaaggggtaatatgggaaaaaggaatatggaccct--tataaataagagaaatc-caaggaaataaggatggaaaatatgtgatgaaa 551  Q
    ||||||| | ||||||||| |||||||||||||||  |||||||| ||||||   |||||||||||| ||| ||||||||||||||||    
T  42735280 gaaggggcattatgggaaataggaatatggaccctcttataaatatgagaaaaggcaaggaaataagcatgaaaaatatgtgatgaaa 42735367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 334 - 384
Target Start/End: Complemental strand, 1521699 - 1521649
Alignment:
Q  334 aaatgatccaccgatgaatcacttatttgatggttcaccctagaatccacc 384  Q
    ||||| ||||||| |||| ||||| ||||||||||||||||||||||||||    
T  1521699 aaatggtccaccggtgaaccacttgtttgatggttcaccctagaatccacc 1521649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 334 - 384
Target Start/End: Original strand, 1522391 - 1522441
Alignment:
Q  334 aaatgatccaccgatgaatcacttatttgatggttcaccctagaatccacc 384  Q
    ||||| ||||||| |||| ||||| |||||||||||| |||||||||||||    
T  1522391 aaatggtccaccggtgaaccacttgtttgatggttcatcctagaatccacc 1522441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 334 - 384
Target Start/End: Original strand, 14707026 - 14707076
Alignment:
Q  334 aaatgatccaccgatgaatcacttatttgatggttcaccctagaatccacc 384  Q
    |||||| |||||| |||| ||||| ||||||||||||||||||||||||||    
T  14707026 aaatgaaccaccggtgaaccacttgtttgatggttcaccctagaatccacc 14707076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 340 - 389
Target Start/End: Original strand, 40600661 - 40600710
Alignment:
Q  340 tccaccgatgaatcacttatttgatggttcaccctagaatccaccattta 389  Q
    |||||||||||| |||||||||||||||||| |||| |||||||| ||||    
T  40600661 tccaccgatgaaccacttatttgatggttcatcctaaaatccaccgttta 40600710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 337 - 377
Target Start/End: Original strand, 35348408 - 35348448
Alignment:
Q  337 tgatccaccgatgaatcacttatttgatggttcaccctaga 377  Q
    |||| ||||| ||||||||||||||||||||||||| ||||    
T  35348408 tgattcaccggtgaatcacttatttgatggttcaccttaga 35348448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 334 - 384
Target Start/End: Original strand, 6697367 - 6697417
Alignment:
Q  334 aaatgatccaccgatgaatcacttatttgatggttcaccctagaatccacc 384  Q
    ||||| ||| ||| |||| ||||||||||||||||||||||||||||||||    
T  6697367 aaatggtccgccggtgaaccacttatttgatggttcaccctagaatccacc 6697417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 447 - 548
Target Start/End: Original strand, 10548172 - 10548274
Alignment:
Q  447 tgtaatgagtcatggaactggaaggggtaatatgggaaaaaggaatatggacccttataaataagag-aaatccaaggaaataaggatggaaaatatgtg 545  Q
    ||||||||||| | ||  | ||||||| | ||||| ||| ||||||||||||| ||||||||| ||| ||| ||||||||||||| |||||| || ||||    
T  10548172 tgtaatgagtcttagagttagaaggggcattatggaaaataggaatatggacctttataaatatgagaaaagccaaggaaataagtatggaatatgtgtg 10548271  T
Q  546 atg 548  Q
    |||    
T  10548272 atg 10548274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 335 - 384
Target Start/End: Complemental strand, 6695836 - 6695787
Alignment:
Q  335 aatgatccaccgatgaatcacttatttgatggttcaccctagaatccacc 384  Q
    |||| ||||||| |||| ||||||||||||||||||||||||||| ||||    
T  6695836 aatggtccaccggtgaaccacttatttgatggttcaccctagaatacacc 6695787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 340 - 384
Target Start/End: Complemental strand, 38558990 - 38558946
Alignment:
Q  340 tccaccgatgaatcacttatttgatggttcaccctagaatccacc 384  Q
    |||||||||||| ||||||||| |||||||| |||||||||||||    
T  38558990 tccaccgatgaaccacttatttaatggttcatcctagaatccacc 38558946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 469 - 551
Target Start/End: Complemental strand, 20319612 - 20319530
Alignment:
Q  469 aggggtaatatgggaaaaaggaatatggacccttataaataagagaaa--tccaaggaaataaggatggaaaatatgtgatgaaa 551  Q
    ||||| ||||||||||| || |||| ||||||||||||||||||||||  ||| |||||||||| ||| || || ||||||||||    
T  20319612 aggggcaatatgggaaatagaaata-ggacccttataaataagagaaaagtcc-aggaaataagcatgaaatatgtgtgatgaaa 20319530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 334 - 384
Target Start/End: Original strand, 7683513 - 7683563
Alignment:
Q  334 aaatgatccaccgatgaatcacttatttgatggttcaccctagaatccacc 384  Q
    ||||||||||||| |||| || || ||||||| ||||||||||||||||||    
T  7683513 aaatgatccaccggtgaaccatttgtttgatgattcaccctagaatccacc 7683563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0590 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 447 - 548
Target Start/End: Complemental strand, 5121 - 5017
Alignment:
Q  447 tgtaatgagtcatggaactggaaggggtaatatgggaaaaaggaatatggaccct--tataaataagag-aaatccaaggaaataaggatggaaaatatg 543  Q
    ||||||||||| | ||  | ||||||| | ||||||||| |||||||||||||||  |||||||| ||| ||| ||||||||||||| ||| || || ||    
T  5121 tgtaatgagtcttagagttagaaggggcattatgggaaataggaatatggacccttatataaatatgagaaaagccaaggaaataagcatgaaatatgtg 5022  T
Q  544 tgatg 548  Q
    |||||    
T  5021 tgatg 5017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University