View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1507_high_23 (Length: 391)

Name: NF1507_high_23
Description: NF1507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1507_high_23
NF1507_high_23
[»] chr1 (4 HSPs)
chr1 (18-379)||(18438563-18438921)
chr1 (18-379)||(18449421-18449779)
chr1 (18-379)||(18454514-18454872)
chr1 (291-342)||(42080703-42080754)
[»] chr5 (3 HSPs)
chr5 (116-359)||(31610025-31610282)
chr5 (290-345)||(11888191-11888246)
chr5 (291-342)||(33417438-33417489)
[»] chr2 (6 HSPs)
chr2 (118-352)||(9446963-9447207)
chr2 (177-379)||(31320217-31320430)
chr2 (291-349)||(21949909-21949967)
chr2 (188-233)||(38346612-38346657)
chr2 (291-339)||(14555896-14555944)
chr2 (291-351)||(13698129-13698189)
[»] chr7 (4 HSPs)
chr7 (291-339)||(8425057-8425105)
chr7 (197-351)||(30559269-30559434)
chr7 (291-342)||(49094557-49094608)
chr7 (291-342)||(38836146-38836197)
[»] chr6 (1 HSPs)
chr6 (290-342)||(6982841-6982893)
[»] chr4 (3 HSPs)
chr4 (291-342)||(2048991-2049042)
chr4 (291-342)||(39735820-39735871)
chr4 (291-340)||(3958957-3959006)
[»] scaffold0141 (1 HSPs)
scaffold0141 (291-339)||(16545-16593)
[»] chr8 (1 HSPs)
chr8 (292-337)||(19168189-19168234)
[»] chr3 (1 HSPs)
chr3 (291-351)||(3830691-3830751)


Alignment Details
Target: chr1 (Bit Score: 340; Significance: 0; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 18 - 379
Target Start/End: Complemental strand, 18438921 - 18438563
Alignment:
Q  18 ccttcagacttagttagtgggccatgacacaaacattggaattccaacatgtcgcttcaatgctgcaagcaagcaaccgtcatacttaggtagtggccat 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18438921 ccttcagacttagttagtgggccatgacacaaacattggaattccaacatgtcgcttcaatgctgcaagcaagcaaccgtcatacttaggtagtggccat 18438822  T
Q  118 gacactaacatgaactgctaagcaaagaccaaaccattccagcaacagatctagtagtaaaaagaatacaatctatcccactaagatagattcagcaacc 217  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18438821 gacactaacatgaactgctaaacaaagaccaaaccattccagcaacagatctagtagtaaaaagaatacaatctatcccactaagatagattcagcaacc 18438722  T
Q  218 atctaaaataacagaagttgaactcaaataagaacaacaactgcaagatatggaactttcaacaagacagtcagattgcttttgatcacaccctttttgg 317  Q
    ||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18438721 atctaaaataacagaagttgaactcaaataagaa---caactgcaagatatggaactttcaacaagacagtcagattgcttttgatcacaccctttttgg 18438625  T
Q  318 aacgcttttgtatgtgctcactactagtgttttgcttcttatgactgcctcctttactcttc 379  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  18438624 aacgcttttgtatgtgctcactactagtgttttgattcttatgactgcctcctttactcttc 18438563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 18 - 379
Target Start/End: Complemental strand, 18449779 - 18449421
Alignment:
Q  18 ccttcagacttagttagtgggccatgacacaaacattggaattccaacatgtcgcttcaatgctgcaagcaagcaaccgtcatacttaggtagtggccat 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18449779 ccttcagacttagttagtgggccatgacacaaacattggaattccaacatgtcgcttcaatgctgcaagcaagcaaccgtcatacttaggtagtggccat 18449680  T
Q  118 gacactaacatgaactgctaagcaaagaccaaaccattccagcaacagatctagtagtaaaaagaatacaatctatcccactaagatagattcagcaacc 217  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18449679 gacactaacatgaactgctaaacaaagaccaaaccattccagcaacagatctagtagtaaaaagaatacaatctatcccactaagatagattcagcaacc 18449580  T
Q  218 atctaaaataacagaagttgaactcaaataagaacaacaactgcaagatatggaactttcaacaagacagtcagattgcttttgatcacaccctttttgg 317  Q
    ||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18449579 atctaaaataacagaagttgaactcaaataagaa---caactgcaagatatggaactttcaacaagacagtcagattgcttttgatcacaccctttttgg 18449483  T
Q  318 aacgcttttgtatgtgctcactactagtgttttgcttcttatgactgcctcctttactcttc 379  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  18449482 aacgcttttgtatgtgctcactactagtgttttgattcttatgactgcctcctttactcttc 18449421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 18 - 379
Target Start/End: Complemental strand, 18454872 - 18454514
Alignment:
Q  18 ccttcagacttagttagtgggccatgacacaaacattggaattccaacatgtcgcttcaatgctgcaagcaagcaaccgtcatacttaggtagtggccat 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18454872 ccttcagacttagttagtgggccatgacacaaacattggaattccaacatgtcgcttcaatgctgcaagcaagcaaccgtcatacttaggtagtggccat 18454773  T
Q  118 gacactaacatgaactgctaagcaaagaccaaaccattccagcaacagatctagtagtaaaaagaatacaatctatcccactaagatagattcagcaacc 217  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18454772 gacactaacatgaactgctaaacaaagaccaaaccattccagcaacagatctagtagtaaaaagaatacaatctatcccactaagatagattcagcaacc 18454673  T
Q  218 atctaaaataacagaagttgaactcaaataagaacaacaactgcaagatatggaactttcaacaagacagtcagattgcttttgatcacaccctttttgg 317  Q
    ||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18454672 atctaaaataacagaagttgaactcaaataagaa---caactgcaagatatggaactttcaacaagacagtcagattgcttttgatcacaccctttttgg 18454576  T
Q  318 aacgcttttgtatgtgctcactactagtgttttgcttcttatgactgcctcctttactcttc 379  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  18454575 aacgcttttgtatgtgctcactactagtgttttgattcttatgactgcctcctttactcttc 18454514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 291 - 342
Target Start/End: Original strand, 42080703 - 42080754
Alignment:
Q  291 gattgcttttgatcacaccctttttggaacgcttttgtatgtgctcactact 342  Q
    ||||||||||||| |||||||||||||||||  |||| ||||||||||||||    
T  42080703 gattgcttttgattacaccctttttggaacgagtttggatgtgctcactact 42080754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 140; Significance: 3e-73; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 116 - 359
Target Start/End: Complemental strand, 31610282 - 31610025
Alignment:
Q  116 atgacactaa-catgaactgctaagcaaagac-caaaccattccagcaacagatctagtagtaaaaa-gaatacaatctatcccactaagatagattcag 212  Q
    |||||||||| |||||||||||||||||| |  ||||||| ||||||| |||| ||||||||||||| |||||||||| ||| |||||||||||||||||    
T  31610282 atgacactaaacatgaactgctaagcaaaaaagcaaaccaatccagcagcagaactagtagtaaaaaagaatacaatcgatcacactaagatagattcag 31610183  T
Q  213 caaccatctaaaataacagaagttgaactcaaataagaacaacaactgcaagatatggaactttcaacaagacagtc-----------agattgcttttg 301  Q
    ||||||||||||||| |||||||||||| |||||||||||||||||| ||| |||||||||||||||||||||||||            |||||||||||    
T  31610182 caaccatctaaaatatcagaagttgaacccaaataagaacaacaactacaaaatatggaactttcaacaagacagtcgcatatatttgggattgcttttg 31610083  T
Q  302 atcacaccctttttggaacgcttttgtatgtgctcactactagtgttttgcttcttat 359  Q
    |||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||    
T  31610082 atcacaccctttttagaacgcgtttgtatgtgctcactactagtgttttgcttcttat 31610025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 290 - 345
Target Start/End: Original strand, 11888191 - 11888246
Alignment:
Q  290 agattgcttttgatcacaccctttttggaacgcttttgtatgtgctcactactagt 345  Q
    ||||||||||||||||||||||| ||||||||  ||||||| ||||||||||||||    
T  11888191 agattgcttttgatcacacccttcttggaacgaatttgtatatgctcactactagt 11888246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 291 - 342
Target Start/End: Complemental strand, 33417489 - 33417438
Alignment:
Q  291 gattgcttttgatcacaccctttttggaacgcttttgtatgtgctcactact 342  Q
    |||| |||||||| ||||||||||| |||||  |||||||||||||||||||    
T  33417489 gattacttttgattacaccctttttagaacgaatttgtatgtgctcactact 33417438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 138; Significance: 5e-72; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 118 - 352
Target Start/End: Complemental strand, 9447207 - 9446963
Alignment:
Q  118 gacactaacatgaactgctaagcaaagaccaaaccattccagcaacagatctagtagtaaaaagaatacaatctatcccac-taagatagattcagcaac 216  Q
    |||||||||||||||||||||||||||  ||||||| |||||||  ||| ||||||||||||||| |||||| |||||| | ||||||||||||||| ||    
T  9447207 gacactaacatgaactgctaagcaaag--caaaccagtccagcagtagaactagtagtaaaaagagtacaatatatcccccctaagatagattcagccac 9447110  T
Q  217 catctaaaataacagaagttgaactcaaataagaacaacaactgcaagatatggaactttcaacaagacagtca-----------gattgcttttgatca 305  Q
    |||| ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||           |||||||||||||||    
T  9447109 catccaaaataacagaagttgaacccacataagaacaacaactgcaagatatggaactttcaacaagacagtcacatatatttgggattgcttttgatca 9447010  T
Q  306 caccctttttggaacgcttttgtatgtgctcactactagtgttttgc 352  Q
    ||||||||||||||||| ||||| |||||||||||||||||||||||    
T  9447009 caccctttttggaacgcgtttgtgtgtgctcactactagtgttttgc 9446963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 177 - 379
Target Start/End: Complemental strand, 31320430 - 31320217
Alignment:
Q  177 aaaagaatacaatctatcccactaagatagattcagcaaccatctaaaataacagaagttgaactcaaataagaacaacaactgcaagatatggaacttt 276  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| ||||| |||||||||||||||||||||||||||||||||||    
T  31320430 aaaagaatacaatctatcccactaagatagattcagcaaccatctagaatagcagaagatgaacccaaataagaacaacaactgcaagatatggaacttt 31320331  T
Q  277 caacaagacagtca-----------gattgcttttgatcacaccctttttggaacgcttttgtatgtgctcactactagtgttttgcttcttatgactgc 365  Q
    |||||||||| |||           |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |||||||| ||| ||||    
T  31320330 caacaagacaatcacatatatttgggattgcttttgatcacaccctttttggaacgcgtttgtatgagctcactactagtgtattgcttctgatgtctgc 31320231  T
Q  366 ctcctttactcttc 379  Q
    ||| ||||||||||    
T  31320230 ctcttttactcttc 31320217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 291 - 349
Target Start/End: Original strand, 21949909 - 21949967
Alignment:
Q  291 gattgcttttgatcacaccctttttggaacgcttttgtatgtgctcactactagtgttt 349  Q
    ||||||||||||| ||||||||||| |||||  ||||||||||||||||||||||||||    
T  21949909 gattgcttttgattacaccctttttagaacgagtttgtatgtgctcactactagtgttt 21949967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 188 - 233
Target Start/End: Original strand, 38346612 - 38346657
Alignment:
Q  188 atctatcccactaagatagattcagcaaccatctaaaataacagaa 233  Q
    ||||||||||| ||||||||||||||||||| | ||||||||||||    
T  38346612 atctatcccaccaagatagattcagcaaccaaccaaaataacagaa 38346657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 339
Target Start/End: Complemental strand, 14555944 - 14555896
Alignment:
Q  291 gattgcttttgatcacaccctttttggaacgcttttgtatgtgctcact 339  Q
    |||||||||||||||||||||||||||||||  ||||||| || |||||    
T  14555944 gattgcttttgatcacaccctttttggaacgagtttgtatatgatcact 14555896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 351
Target Start/End: Complemental strand, 13698189 - 13698129
Alignment:
Q  291 gattgcttttgatcacaccctttttggaacgcttttgtatgtgctcactactagtgttttg 351  Q
    ||||||||||||||||||||||  ||||||   |||| |||||||||||||| ||| ||||    
T  13698189 gattgcttttgatcacacccttcatggaaccagtttgaatgtgctcactacttgtgctttg 13698129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000009; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 291 - 339
Target Start/End: Complemental strand, 8425105 - 8425057
Alignment:
Q  291 gattgcttttgatcacaccctttttggaacgcttttgtatgtgctcact 339  Q
    |||||||||||||||||||||| ||||||||  ||||||||||||||||    
T  8425105 gattgcttttgatcacacccttcttggaacgagtttgtatgtgctcact 8425057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 197 - 351
Target Start/End: Original strand, 30559269 - 30559434
Alignment:
Q  197 actaagatagattcagcaaccatctaaaataacagaagttgaactcaaataagaacaacaactgcaagatatggaactttcaacaagacagtca------ 290  Q
    |||||||||||||||||||||| | |||||||||||||  |||  |||||| ||||| ||||||||  |||  ||||| |||||| ||| ||||          
T  30559269 actaagatagattcagcaaccacccaaaataacagaagccgaaaccaaatatgaacagcaactgcagaatacagaactgtcaacatgaccgtcacaaatc 30559368  T
Q  291 -----gattgcttttgatcacaccctttttggaacgcttttgtatgtgctcactactagtgttttg 351  Q
         ||||||||||||| ||||||||||||||||   ||| ||||||||||| ||| ||| ||||    
T  30559369 tttgggattgcttttgataacaccctttttggaacaagtttctatgtgctcacgacttgtgctttg 30559434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 291 - 342
Target Start/End: Original strand, 49094557 - 49094608
Alignment:
Q  291 gattgcttttgatcacaccctttttggaacgcttttgtatgtgctcactact 342  Q
    ||||||||||||| ||||| |||||||||||  |||||||||||||||||||    
T  49094557 gattgcttttgataacaccttttttggaacgtgtttgtatgtgctcactact 49094608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 291 - 342
Target Start/End: Complemental strand, 38836197 - 38836146
Alignment:
Q  291 gattgcttttgatcacaccctttttggaacgcttttgtatgtgctcactact 342  Q
    ||||||||||||| ||||| |||||||||||  ||||||| |||||||||||    
T  38836197 gattgcttttgataacaccatttttggaacgagtttgtatatgctcactact 38836146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 290 - 342
Target Start/End: Complemental strand, 6982893 - 6982841
Alignment:
Q  290 agattgcttttgatcacaccctttttggaacgcttttgtatgtgctcactact 342  Q
    |||||||||||||| ||||||||||| |||||  |||||||||||||||||||    
T  6982893 agattgcttttgattacacccttttttgaacgagtttgtatgtgctcactact 6982841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 291 - 342
Target Start/End: Complemental strand, 2049042 - 2048991
Alignment:
Q  291 gattgcttttgatcacaccctttttggaacgcttttgtatgtgctcactact 342  Q
    ||||||||||||| |||||||||||||||||  ||||||| |||||||||||    
T  2049042 gattgcttttgataacaccctttttggaacgagtttgtatatgctcactact 2048991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 291 - 342
Target Start/End: Complemental strand, 39735871 - 39735820
Alignment:
Q  291 gattgcttttgatcacaccctttttggaacgcttttgtatgtgctcactact 342  Q
    ||||||||||||| |||||||| ||||||||  |||||||||||||||||||    
T  39735871 gattgcttttgattacacccttcttggaacgagtttgtatgtgctcactact 39735820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 291 - 340
Target Start/End: Original strand, 3958957 - 3959006
Alignment:
Q  291 gattgcttttgatcacaccctttttggaacgcttttgtatgtgctcacta 340  Q
    ||||||||||||| ||||||||||| |||||  |||||||||||||||||    
T  3958957 gattgcttttgatgacaccctttttagaacgagtttgtatgtgctcacta 3959006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0141 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0141
Description:

Target: scaffold0141; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 339
Target Start/End: Original strand, 16545 - 16593
Alignment:
Q  291 gattgcttttgatcacaccctttttggaacgcttttgtatgtgctcact 339  Q
    |||||||||||||||||||||| ||||||||  ||| ||||||||||||    
T  16545 gattgcttttgatcacacccttcttggaacgagtttatatgtgctcact 16593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 292 - 337
Target Start/End: Complemental strand, 19168234 - 19168189
Alignment:
Q  292 attgcttttgatcacaccctttttggaacgcttttgtatgtgctca 337  Q
    |||||||||||| ||||||||||| |||||  ||||||||||||||    
T  19168234 attgcttttgatgacaccctttttagaacgagtttgtatgtgctca 19168189  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 351
Target Start/End: Original strand, 3830691 - 3830751
Alignment:
Q  291 gattgcttttgatcacaccctttttggaacgcttttgtatgtgctcactactagtgttttg 351  Q
    |||||||||||||||||| |||  |||||||  |||| |||||||||||||| ||| ||||    
T  3830691 gattgcttttgatcacactcttcatggaacgagtttgaatgtgctcactacttgtgctttg 3830751  T

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