View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1507_high_25 (Length: 338)
Name: NF1507_high_25
Description: NF1507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1507_high_25 |
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Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 14 - 293
Target Start/End: Original strand, 35409933 - 35410209
Alignment:
| Q |
14 |
acataattctattatggtgggcctgggaataatcctaagtgtccatgatttttagttgacgtacatataaattcaattggacacgtatagtttggtttca |
113 |
Q |
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| T |
35409933 |
acatacttctattatggtgggcctgggaataatcctaagtgtccatgatttttagttgacgtacatataaattcaattggacacgtatagtttggtttca |
35410032 |
T |
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| Q |
114 |
aatttgtcccacgtcgaagtaatgtcttctagtttttgttacattcttttcttgtacgtaattaaagaattatttgtgttgtttccatccttgttttgtc |
213 |
Q |
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||||||||||||||| |||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |||| |
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| T |
35410033 |
aatttgtcccacgtctaagtaatgtcttctagttcttgttacattctttccttgtacgtaattaaagaattatttgtgctgtttccatccttgttctgtc |
35410132 |
T |
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| Q |
214 |
cactttggttgatattatgaattctgaacccaaaaacacatgatagggaatggcaattttgaatcatgttttatttcacc |
293 |
Q |
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| T |
35410133 |
cactttggaagatattgtgaattctgaaaccaaaa--acatgatagggaatggcaattttgaat-atgttttatttcacc |
35410209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 322
Target Start/End: Original strand, 35410340 - 35410369
Alignment:
| Q |
293 |
cagaaggcctcaactatagctgcacgtaat |
322 |
Q |
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| T |
35410340 |
cagaaggcctcaactatagctgcacgtaat |
35410369 |
T |
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