View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1507_high_29 (Length: 319)
Name: NF1507_high_29
Description: NF1507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1507_high_29 |
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Alignment Details
Target: chr7 (Bit Score: 95; Significance: 2e-46; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 112 - 243
Target Start/End: Original strand, 18821461 - 18821598
Alignment:
| Q |
112 |
aaccattatgagtcaacaagcaacatggcaaactaagaagactcaac------tccaacacaacctccacaaatgaatgttgatagtccaagatgaatag |
205 |
Q |
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| T |
18821461 |
aaccattatgagtcaacaaacaacatggcaaaccaagaagactcaactccaactccaacacaacctccacaaatgaatgttgatagtccaagatgaatag |
18821560 |
T |
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| Q |
206 |
tacatgttcataggatcaggctcaatataagacaaatg |
243 |
Q |
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| T |
18821561 |
taaatgttcatcggatgaggctcaatataagacaaatg |
18821598 |
T |
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Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 247 - 304
Target Start/End: Original strand, 18821832 - 18821889
Alignment:
| Q |
247 |
aaattcatatattcaagaatgacttacaatagcaacataatttattgctagatgcaat |
304 |
Q |
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| T |
18821832 |
aaattcatatattcaagaatgacttacaatagcaacataatttattgctagatgcaat |
18821889 |
T |
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