View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1507_high_3 (Length: 631)
Name: NF1507_high_3
Description: NF1507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1507_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 582; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 582; E-Value: 0
Query Start/End: Original strand, 1 - 611
Target Start/End: Complemental strand, 51935619 - 51935009
Alignment:
| Q |
1 |
tccgaatagtatctgcaagagcttatcattctctatttatgcataatatgtgagtactaatggaatcacctatctttttcacacaaatattttaagccgt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51935619 |
tccgaatagtatctgcaagagcttatcattctctatttatgcataatatgtgagtactaatggaatcacctatctttttcacacaaatattttaagccgt |
51935520 |
T |
|
| Q |
101 |
accaattaattctttgcaaccttaaaaactagatttagcatgcacaattatacgacaannnnnnnacaggtgcatccgaccaacacctgaagagctagag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
51935519 |
accaattaattctttgcaaccttaaaaactagatttagcatgcacaattatacgacaatttttttacaggtgcatccgaccaacacctgaagagctagag |
51935420 |
T |
|
| Q |
201 |
gaatttggtaccccagatttcactatatacaatgcaggacagttcccttgtaatcgttttactcattacatgacttcatcaactagcatagacatgaatc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51935419 |
gaatttggtaccccagatttcactatatacaatgcaggacagttcccttgtaatcgttttactcattacatgacttcatcaactagcatagacatgaatc |
51935320 |
T |
|
| Q |
301 |
ttacaagaaaggaaatggtcatccttggcacacaatatgctggagaaatgaagaaaggtctctttagtttaatgcactacctcatgccgaagcgcaatat |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
51935319 |
ttacaagaaaggaaatggtcatccttggcacacaatatgctggagaaatgaagaaaggtctctttagtttaatgcactacctcatgccgaagcgcaatat |
51935220 |
T |
|
| Q |
401 |
tctctccctacattctggatgtaatatgggcaaaaatggcgctgttgcgctcttttttggattatcaggtgaagtttgatgactaccttttatcaattga |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
51935219 |
tctctccctacattctggatgtaatatgggcaaaaatggcgatgttgcgctcttttttggattatcaggtgaagtttgataactaccttttatcaattga |
51935120 |
T |
|
| Q |
501 |
tgtttgcgtgtagtattgagtttctattaatctggttaattttgtgatctcttaggtactggaaagactactctttctaccgatcataaccggtatttga |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
51935119 |
tgtttgcgtgtagtattgagtttctattaatctggttaattttgtgatctcttaggtactggaaagactactctttctaccgatcataaccggtatttga |
51935020 |
T |
|
| Q |
601 |
ttggagatgat |
611 |
Q |
| |
|
||||||||||| |
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|
| T |
51935019 |
ttggagatgat |
51935009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 97; Significance: 2e-47; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 166 - 470
Target Start/End: Complemental strand, 12996152 - 12995848
Alignment:
| Q |
166 |
acaggtgcatccgaccaacacctgaagagctagaggaatttggtaccccagatttcactatatacaatgcaggacagttcccttgtaatcgttttactca |
265 |
Q |
| |
|
||||||| |||||||| | ||||||||||| ||| | |||||||| || || ||||||||||||||||| ||| |||| || ||||| ||||| ||||| |
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|
| T |
12996152 |
acaggtgtatccgacccagtcctgaagagctggagaattttggtactccggacttcactatatacaatgccggaaagtttccatgtaaccgtttcactca |
12996053 |
T |
|
| Q |
266 |
ttacatgacttcatcaactagcatagacatgaatcttacaagaaaggaaatggtcatccttggcacacaatatgctggagaaatgaagaaaggtctcttt |
365 |
Q |
| |
|
|||||||| || || |||||||| || | |||||| | |||| ||||||||| ||||| ||||||||||| || || ||||||||||||||||| || |
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|
| T |
12996052 |
ctacatgacatcttccactagcattgatcttaatcttgctagaagggaaatggttatcctcggcacacaatacgccggggaaatgaagaaaggtcttttc |
12995953 |
T |
|
| Q |
366 |
agtttaatgcactacctcatgccgaagcgcaatattctctccctacattctggatgtaatatgggcaaaaatggcgctgttgcgctcttttttggattat |
465 |
Q |
| |
|
||| | ||||| || |||||||| |||||| | ||||||||| |||| ||||| | ||||||||||||| ||||| |||||| ||||| |||||| | | |
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|
| T |
12995952 |
agtgtcatgcattatctcatgcctaagcgccaaattctctccttacactctggttctaatatgggcaaaggtggcgatgttgctctcttctttggactct |
12995853 |
T |
|
| Q |
466 |
caggt |
470 |
Q |
| |
|
||||| |
|
|
| T |
12995852 |
caggt |
12995848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 166 - 470
Target Start/End: Complemental strand, 13070805 - 13070501
Alignment:
| Q |
166 |
acaggtgcatccgaccaacacctgaagagctagaggaatttggtaccccagatttcactatatacaatgcaggacagttcccttgtaatcgttttactca |
265 |
Q |
| |
|
||||||| |||||||| | ||||||||||| ||| | |||||||| || || ||||||||||||||||| ||| |||| || ||||| ||||| ||||| |
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|
| T |
13070805 |
acaggtgtatccgacccagtcctgaagagctggagaattttggtactccggacttcactatatacaatgccggaaagtttccatgtaaccgtttcactca |
13070706 |
T |
|
| Q |
266 |
ttacatgacttcatcaactagcatagacatgaatcttacaagaaaggaaatggtcatccttggcacacaatatgctggagaaatgaagaaaggtctcttt |
365 |
Q |
| |
|
|||||||| || || |||||||| || | |||||| | |||| ||||||||| ||||| ||||||||||| || || ||||||||||||||||| || |
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|
| T |
13070705 |
ctacatgacatcttccactagcattgatcttaatcttgctagaagggaaatggttatcctcggcacacaatacgccggggaaatgaagaaaggtcttttc |
13070606 |
T |
|
| Q |
366 |
agtttaatgcactacctcatgccgaagcgcaatattctctccctacattctggatgtaatatgggcaaaaatggcgctgttgcgctcttttttggattat |
465 |
Q |
| |
|
||| | ||||| || |||||||| |||||| | ||||||||| |||| ||||| | ||||||||||||| ||||| |||||| ||||| |||||| | | |
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|
| T |
13070605 |
agtgtcatgcattatctcatgcctaagcgccaaattctctccttacactctggttctaatatgggcaaaggtggcgatgttgctctcttctttggactct |
13070506 |
T |
|
| Q |
466 |
caggt |
470 |
Q |
| |
|
||||| |
|
|
| T |
13070505 |
caggt |
13070501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 553 - 611
Target Start/End: Complemental strand, 12995680 - 12995622
Alignment:
| Q |
553 |
taggtactggaaagactactctttctaccgatcataaccggtatttgattggagatgat |
611 |
Q |
| |
|
|||||||||||||||| ||||||||||| |||||||| | |||||||||||||||||| |
|
|
| T |
12995680 |
taggtactggaaagacaactctttctactgatcataatagatatttgattggagatgat |
12995622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 553 - 611
Target Start/End: Complemental strand, 13070330 - 13070272
Alignment:
| Q |
553 |
taggtactggaaagactactctttctaccgatcataaccggtatttgattggagatgat |
611 |
Q |
| |
|
|||||||||||||||| ||||||||||| |||||||| | |||||||||||||||||| |
|
|
| T |
13070330 |
taggtactggaaagacaactctttctactgatcataatagatatttgattggagatgat |
13070272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 84; Significance: 1e-39; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 167 - 470
Target Start/End: Complemental strand, 28138193 - 28137890
Alignment:
| Q |
167 |
caggtgcatccgaccaacacctgaagagctagaggaatttggtaccccagatttcactatatacaatgcaggacagttcccttgtaatcgttttactcat |
266 |
Q |
| |
|
||||||||| ||||| || ||| ||||||| ||| | ||||| || |||||||||||||| || ||||||||| ||| || |||||||||| ||| ||| |
|
|
| T |
28138193 |
caggtgcattcgacctactcctaaagagcttgagaattttggcacaccagatttcactatttataatgcaggaaggtttccatgtaatcgttatacacat |
28138094 |
T |
|
| Q |
267 |
tacatgacttcatcaactagcatagacatgaatcttacaagaaaggaaatggtcatccttggcacacaatatgctggagaaatgaagaaaggtctcttta |
366 |
Q |
| |
|
|||||||| || ||||| || | || | |||||| |||| |||||||||||||| ||||| |||||||||||||| ||||||||||| ||||| |||| |
|
|
| T |
28138093 |
tacatgacatcttcaaccagtgttgatcttaatctttcaaggaaggaaatggtcattcttggaacacaatatgctggtgaaatgaagaagggtcttttta |
28137994 |
T |
|
| Q |
367 |
gtttaatgcactacctcatgccgaagcgcaatattctctccctacattctggatgtaatatgggcaaaaatggcgctgttgcgctcttttttggattatc |
466 |
Q |
| |
|
|| | ||||| || |||||||| ||||| | || || ||| |||| ||||| | |||||||||||| |||| | |||||| ||||| |||||| | || |
|
|
| T |
28137993 |
gtgtcatgcattatctcatgcctaagcgtcaaatcctttccttacactctggcagcaatatgggcaaagatggtgatgttgctctcttctttggactctc |
28137894 |
T |
|
| Q |
467 |
aggt |
470 |
Q |
| |
|
|||| |
|
|
| T |
28137893 |
aggt |
28137890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 552 - 611
Target Start/End: Complemental strand, 28137717 - 28137658
Alignment:
| Q |
552 |
ttaggtactggaaagactactctttctaccgatcataaccggtatttgattggagatgat |
611 |
Q |
| |
|
|||||||| ||||| ||||||||||| || |||||||| |||| ||||||||||||||| |
|
|
| T |
28137717 |
ttaggtaccggaaaaactactctttcaacggatcataataggtacttgattggagatgat |
28137658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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