View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1507_high_31 (Length: 316)

Name: NF1507_high_31
Description: NF1507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1507_high_31
NF1507_high_31
[»] chr6 (19 HSPs)
chr6 (20-298)||(4558637-4558915)
chr6 (20-204)||(4572478-4572660)
chr6 (20-138)||(4587144-4587260)
chr6 (20-103)||(4612253-4612334)
chr6 (219-296)||(4572706-4572788)
chr6 (244-296)||(4587258-4587310)
chr6 (20-66)||(3173515-3173561)
chr6 (20-62)||(4255395-4255437)
chr6 (20-70)||(4258742-4258792)
chr6 (20-66)||(4513549-4513595)
chr6 (20-66)||(4507423-4507469)
chr6 (20-66)||(4603622-4603668)
chr6 (20-66)||(4618813-4618859)
chr6 (20-70)||(4623819-4623869)
chr6 (20-68)||(4575967-4576015)
chr6 (20-72)||(4581526-4581578)
chr6 (28-105)||(4599683-4599758)
chr6 (20-62)||(4627662-4627704)
chr6 (20-68)||(4482377-4482425)
[»] scaffold0475 (1 HSPs)
scaffold0475 (20-68)||(2336-2384)
[»] chr3 (1 HSPs)
chr3 (20-66)||(1282945-1282991)
[»] scaffold0288 (1 HSPs)
scaffold0288 (20-66)||(2021-2067)
[»] scaffold0199 (1 HSPs)
scaffold0199 (20-66)||(1270-1316)
[»] chr8 (2 HSPs)
chr8 (20-66)||(1676033-1676079)
chr8 (20-68)||(20862378-20862426)
[»] chr7 (1 HSPs)
chr7 (22-72)||(3088259-3088309)


Alignment Details
Target: chr6 (Bit Score: 267; Significance: 1e-149; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 20 - 298
Target Start/End: Original strand, 4558637 - 4558915
Alignment:
Q  20 tgatatggccttgaactggatatggaattaacacagcatgtggttttttatcactcatttttgagtttttgtgtttgaatgttgagctaagggaagccaa 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4558637 tgatatggccttgaactggatatggaattaacacagcatgtggttttttatcactcatttttgagtttttgtgtttgaatgttgagctaagggaagccaa 4558736  T
Q  120 tggtttaataaagataaagccaatgtttcttggatttgtgtaaaagaagataagagacaaaagacaaggaaagcaaactcaaattctaaggaatatgtaa 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||    
T  4558737 tggtttaataaagataaagccaatgtttcttggatttgtgtaaaagaagataagagacaaaagtcaaggaaagcaaactcaaattctaagtaatatgtaa 4558836  T
Q  220 cacaataattgatacatacttgtcaagtcaccactttttgttatagaaggaaaacaatttttcattaaaaagtttattg 298  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4558837 cacaataattgatacatacttatcaagtcaccactttttgttatagaaggaaaacaatttttcattaaaaagtttattg 4558915  T

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Target: chr6; HSP #2
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 20 - 204
Target Start/End: Original strand, 4572478 - 4572660
Alignment:
Q  20 tgatatggccttgaactggatatggaattaacacagcatgtggttttttatcactcatttttgagtttttgtgtttgaatgttgagctaagggaagccaa 119  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||    
T  4572478 tgatatggccttgaactggatatgggattaacacagcatgtggttttttatcactcattattgagtttttgtgtttgaatgttgagctaa-ggaaaccaa 4572576  T
Q  120 tggtttaataaagataaagccaatgtttcttggatttgtgtaaaagaagataagagacaaaagacaaggaaagcaaactcaaatt 204  Q
    || ||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| |||||||    
T  4572577 tgttttaataaagataaatccaatgtttcttggatttgtggaaaagaagat-agagacaaaagacaaggaaagcaaaatcaaatt 4572660  T

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Target: chr6; HSP #3
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 20 - 138
Target Start/End: Original strand, 4587144 - 4587260
Alignment:
Q  20 tgatatggccttgaactggatatggaattaacacagcatgtggttttttatcactcatttttgagtttttgtgtttgaatgttgagctaagggaagccaa 119  Q
    |||||||||||||||||||| |||| |||||||||||||| ||||||  ||||||||||| ||||  ||||||||||||| |||||| ||||||||||||    
T  4587144 tgatatggccttgaactggagatgggattaacacagcatgaggttttgaatcactcatttctgag--tttgtgtttgaattttgagcaaagggaagccaa 4587241  T
Q  120 tggtttaataaagataaag 138  Q
    |||||||||| ||||||||    
T  4587242 tggtttaatagagataaag 4587260  T

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Target: chr6; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 20 - 103
Target Start/End: Complemental strand, 4612334 - 4612253
Alignment:
Q  20 tgatatggccttgaactggatatggaattaacacagcatgtggttttttatcactcatttttgagtttttgtgtttgaatgttg 103  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||  ||||||||||| ||||  |||||||||||||||||    
T  4612334 tgatatggccttgaactggatatggaattaacactgcatgtggttttgaatcactcatttctgag--tttgtgtttgaatgttg 4612253  T

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Target: chr6; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 219 - 296
Target Start/End: Original strand, 4572706 - 4572788
Alignment:
Q  219 acacaataattgatacatacttgtcaagtcaccactttttgtt-----atagaaggaaaacaatttttcattaaaaagtttat 296  Q
    |||||||||||||| |||||| |||||||||||||||||||||     | |||||||||||||||||||||||||||||||||    
T  4572706 acacaataattgatgcatactagtcaagtcaccactttttgttacgtgagagaaggaaaacaatttttcattaaaaagtttat 4572788  T

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Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 244 - 296
Target Start/End: Original strand, 4587258 - 4587310
Alignment:
Q  244 aagtcaccactttttgttatagaaggaaaacaatttttcattaaaaagtttat 296  Q
    |||| |||||||||||||||| ||||||| |||||||||||||||||||||||    
T  4587258 aagtgaccactttttgttataaaaggaaatcaatttttcattaaaaagtttat 4587310  T

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Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 20 - 66
Target Start/End: Original strand, 3173515 - 3173561
Alignment:
Q  20 tgatatggccttgaactggatatggaattaacacagcatgtggtttt 66  Q
    |||||||||||||||||||||||||| ||||||| ||||||||||||    
T  3173515 tgatatggccttgaactggatatggagttaacactgcatgtggtttt 3173561  T

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Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 20 - 62
Target Start/End: Complemental strand, 4255437 - 4255395
Alignment:
Q  20 tgatatggccttgaactggatatggaattaacacagcatgtgg 62  Q
    |||||||||||||||||||||||||||| ||||||||||||||    
T  4255437 tgatatggccttgaactggatatggaatcaacacagcatgtgg 4255395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 20 - 70
Target Start/End: Complemental strand, 4258792 - 4258742
Alignment:
Q  20 tgatatggccttgaactggatatggaattaacacagcatgtggttttttat 70  Q
    |||||||||||||| ||||||||||||| |||||||||||||| |||||||    
T  4258792 tgatatggccttgagctggatatggaatcaacacagcatgtggctttttat 4258742  T

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Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 20 - 66
Target Start/End: Complemental strand, 4513595 - 4513549
Alignment:
Q  20 tgatatggccttgaactggatatggaattaacacagcatgtggtttt 66  Q
    ||||||||||||||| |||||||||||| ||||||||||||||||||    
T  4513595 tgatatggccttgaagtggatatggaatcaacacagcatgtggtttt 4513549  T

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Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 66
Target Start/End: Original strand, 4507423 - 4507469
Alignment:
Q  20 tgatatggccttgaactggatatggaattaacacagcatgtggtttt 66  Q
    ||||||||||||||  |||||||||||| ||||||||||||||||||    
T  4507423 tgatatggccttgagttggatatggaatcaacacagcatgtggtttt 4507469  T

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Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 66
Target Start/End: Original strand, 4603622 - 4603668
Alignment:
Q  20 tgatatggccttgaactggatatggaattaacacagcatgtggtttt 66  Q
    ||||||||||||||| |||||||||||| |||||||||||| |||||    
T  4603622 tgatatggccttgaagtggatatggaatcaacacagcatgttgtttt 4603668  T

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Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 66
Target Start/End: Original strand, 4618813 - 4618859
Alignment:
Q  20 tgatatggccttgaactggatatggaattaacacagcatgtggtttt 66  Q
    |||||||||||||||||||||||||||| | |||| |||||||||||    
T  4618813 tgatatggccttgaactggatatggaatcatcacaacatgtggtttt 4618859  T

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Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 70
Target Start/End: Original strand, 4623819 - 4623869
Alignment:
Q  20 tgatatggccttgaactggatatggaattaacacagcatgtggttttttat 70  Q
    ||||||| |||||||||||||||| ||| |||||||||||||| |||||||    
T  4623819 tgatatgaccttgaactggatatgcaatcaacacagcatgtggctttttat 4623869  T

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Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 68
Target Start/End: Original strand, 4575967 - 4576015
Alignment:
Q  20 tgatatggccttgaactggatatggaattaacacagcatgtggtttttt 68  Q
    |||||||||||||||||||| ||||| ||||||| |||||||| |||||    
T  4575967 tgatatggccttgaactggaaatggagttaacactgcatgtggcttttt 4576015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 72
Target Start/End: Original strand, 4581526 - 4581578
Alignment:
Q  20 tgatatggccttgaactggatatggaattaacacagcatgtggttttttatca 72  Q
    ||||||| ||||||| |||||||||||| ||||| |||||||| |||||||||    
T  4581526 tgatatgtccttgaagtggatatggaatcaacactgcatgtggctttttatca 4581578  T

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Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 105
Target Start/End: Original strand, 4599683 - 4599758
Alignment:
Q  28 ccttgaactggatatggaattaacacagcatgtggttttttatcactcatttttgagtttttgtgtttgaatgttgag 105  Q
    ||||||| |||  ||||||| || || |||||| |||||||| ||||||||| |||||||  ||||||||||||||||    
T  4599683 ccttgaattggtaatggaatcaatactgcatgtagttttttaccactcatttgtgagttt--gtgtttgaatgttgag 4599758  T

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Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 62
Target Start/End: Original strand, 4627662 - 4627704
Alignment:
Q  20 tgatatggccttgaactggatatggaattaacacagcatgtgg 62  Q
    ||||||||||||||| |||| ||||||| ||||||||||||||    
T  4627662 tgatatggccttgaagtggaaatggaatcaacacagcatgtgg 4627704  T

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Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 68
Target Start/End: Original strand, 4482377 - 4482425
Alignment:
Q  20 tgatatggccttgaactggatatggaattaacacagcatgtggtttttt 68  Q
    |||||||||||||| ||||| ||||| | ||||| ||||||||||||||    
T  4482377 tgatatggccttgagctggaaatggagtcaacactgcatgtggtttttt 4482425  T

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Target: scaffold0475 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0475
Description:

Target: scaffold0475; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 68
Target Start/End: Original strand, 2336 - 2384
Alignment:
Q  20 tgatatggccttgaactggatatggaattaacacagcatgtggtttttt 68  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||    
T  2336 tgatatggccttgaactggatatggaatcaacacagcatgtggtttttt 2384  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 20 - 66
Target Start/End: Original strand, 1282945 - 1282991
Alignment:
Q  20 tgatatggccttgaactggatatggaattaacacagcatgtggtttt 66  Q
    |||||||||||||| ||||||||||||| ||||||||||||||||||    
T  1282945 tgatatggccttgagctggatatggaatcaacacagcatgtggtttt 1282991  T

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Target: scaffold0288 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 66
Target Start/End: Complemental strand, 2067 - 2021
Alignment:
Q  20 tgatatggccttgaactggatatggaattaacacagcatgtggtttt 66  Q
    |||||||||||||||||||||||||||| | |||| |||||||||||    
T  2067 tgatatggccttgaactggatatggaatcatcacaacatgtggtttt 2021  T

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Target: scaffold0199 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 66
Target Start/End: Original strand, 1270 - 1316
Alignment:
Q  20 tgatatggccttgaactggatatggaattaacacagcatgtggtttt 66  Q
    |||||||||||||| ||||||||||||| ||||||||||||| ||||    
T  1270 tgatatggccttgagctggatatggaatgaacacagcatgtgatttt 1316  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 66
Target Start/End: Original strand, 1676033 - 1676079
Alignment:
Q  20 tgatatggccttgaactggatatggaattaacacagcatgtggtttt 66  Q
    |||||||||||||| ||||||||||||| ||||||||||||| ||||    
T  1676033 tgatatggccttgagctggatatggaatgaacacagcatgtgatttt 1676079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 20862426 - 20862378
Alignment:
Q  20 tgatatggccttgaactggatatggaattaacacagcatgtggtttttt 68  Q
    ||||||| ||||||| |||||||||| ||||||| ||||||||||||||    
T  20862426 tgatatgaccttgaagtggatatggagttaacactgcatgtggtttttt 20862378  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 72
Target Start/End: Original strand, 3088259 - 3088309
Alignment:
Q  22 atatggccttgaactggatatggaattaacacagcatgtggttttttatca 72  Q
    ||||| ||||||| |||||||||||| |||||||||||||| |||||||||    
T  3088259 atatgaccttgaagtggatatggaatcaacacagcatgtggctttttatca 3088309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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