View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1507_high_33 (Length: 308)

Name: NF1507_high_33
Description: NF1507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1507_high_33
NF1507_high_33
[»] chr1 (4 HSPs)
chr1 (18-303)||(4678654-4678938)
chr1 (84-226)||(34466955-34467089)
chr1 (84-265)||(15594859-15595040)
chr1 (179-244)||(52549269-52549334)
[»] chr2 (9 HSPs)
chr2 (18-281)||(16657613-16657876)
chr2 (18-244)||(7542072-7542298)
chr2 (86-271)||(43625231-43625416)
chr2 (72-280)||(14703218-14703426)
chr2 (147-280)||(12234499-12234632)
chr2 (147-266)||(12258806-12258925)
chr2 (84-280)||(16662154-16662350)
chr2 (147-214)||(11999283-11999350)
chr2 (147-214)||(12245631-12245698)
[»] chr7 (22 HSPs)
chr7 (18-276)||(8659177-8659435)
chr7 (18-279)||(8654261-8654522)
chr7 (19-301)||(1301249-1301531)
chr7 (23-279)||(10494475-10494731)
chr7 (18-244)||(8667265-8667491)
chr7 (18-279)||(13333552-13333813)
chr7 (18-262)||(3147092-3147336)
chr7 (84-271)||(17267758-17267945)
chr7 (18-271)||(17260060-17260313)
chr7 (18-264)||(27830971-27831217)
chr7 (41-280)||(8646687-8646926)
chr7 (86-265)||(6789337-6789516)
chr7 (137-279)||(8616492-8616634)
chr7 (195-280)||(8673894-8673979)
chr7 (20-265)||(8545458-8545703)
chr7 (182-279)||(8585966-8586063)
chr7 (134-266)||(8664159-8664289)
chr7 (33-265)||(8570136-8570368)
chr7 (43-123)||(29577793-29577873)
chr7 (184-280)||(8537846-8537942)
chr7 (179-231)||(8664919-8664971)
chr7 (43-123)||(29581962-29582042)
[»] chr4 (3 HSPs)
chr4 (18-244)||(9335987-9336213)
chr4 (88-277)||(30775065-30775254)
chr4 (89-244)||(35132303-35132458)
[»] chr5 (1 HSPs)
chr5 (18-264)||(28219744-28219990)
[»] chr8 (1 HSPs)
chr8 (18-280)||(43744626-43744888)


Alignment Details
Target: chr1 (Bit Score: 270; Significance: 1e-151; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 18 - 303
Target Start/End: Original strand, 4678654 - 4678938
Alignment:
Q  18 actactttgtagaggagttcaaaaagaagaataatgtggacattagtaagaacgcaaaacccttatggaggttgagaactgcctgcgagagggcaaagag 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  4678654 actactttgtagaggagttcaaaaagaagaataatgtggacattagtaagaacgcaaaacccttaaggaggttgagaactgcctgcgagagggcaaagag 4678753  T
Q  118 gacactctctttcgcctttgtcaccactgttgaggtagattctttatttcagggaatagacttttcttcatctattactcgtgccaagtttgaggaaatt 217  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4678754 gacactctctttcgcctttgtcaccactgttgag-tagattctttatttcagggaatagacttttcttcatctattactcgtgccaagtttgaggaaatt 4678852  T
Q  218 aatatggaccttttcaacgagtgtatggaaactgttaagagttgtcttagtgattcaaagatgcgcgggagtgatattgatgatgt 303  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  4678853 aatatggaccttttcaacgagtgtatggaaactgttaagagttgtcttagtgattcaaagatgcgcgggagtaatattgatgatgt 4678938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 84 - 226
Target Start/End: Original strand, 34466955 - 34467089
Alignment:
Q  84 ggaggttgagaactgcctgcgagagggcaaagaggacactctctttcgcctttgtcaccactgttgaggtagattctttatttcagggaatagacttttc 183  Q
    |||||||||||||||| |||||||  ||||||||||||||||        |||||| | ||||||||  |||||||||||| | ||| ||| |||||       
T  34466955 ggaggttgagaactgcgtgcgagaatgcaaagaggacactct--------tttgtcgctactgttgaaatagattctttatatgaggtaattgacttcca 34467046  T
Q  184 ttcatctattactcgtgccaagtttgaggaaattaatatggac 226  Q
    ||| || || ||||||||||||||||||||||| |||||||||    
T  34467047 ttcgtcaatcactcgtgccaagtttgaggaaatcaatatggac 34467089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 84 - 265
Target Start/End: Complemental strand, 15595040 - 15594859
Alignment:
Q  84 ggaggttgagaactgcctgcgagagggcaaagaggacactctctttcgcctttgtcaccactgttgaggtagattctttatttcagggaatagacttttc 183  Q
    |||| ||||||||||| ||||| |||||||| |||  |||||||||  |   |||||| ||  |||||||||||| ||||||| | || || ||||| |     
T  15595040 ggagattgagaactgcgtgcgaaagggcaaaaagggtactctcttttactactgtcactaccattgaggtagattgtttatttaacggtattgacttctt 15594941  T
Q  184 ttcatctattactcgtgccaagtttgaggaaattaatatggaccttttcaacgagtgtatggaaactgttaagagttgtctt 265  Q
    ||||||  |||||||| |||||||||| ||||| || |||||| |||| || || |||||| | |  ||| |||||||||||    
T  15594940 ttcatcggttactcgttccaagtttgaagaaatcaacatggacttttttaaggattgtatgaagatagttgagagttgtctt 15594859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 179 - 244
Target Start/End: Original strand, 52549269 - 52549334
Alignment:
Q  179 ttttcttcatctattactcgtgccaagtttgaggaaattaatatggaccttttcaacgagtgtatg 244  Q
    ||||||||||| || | | | ||||||||||||||||| |||||||||||||| || |||||||||    
T  52549269 ttttcttcatcgatcaatagggccaagtttgaggaaatgaatatggacctttttaaggagtgtatg 52549334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 164; Significance: 1e-87; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 18 - 281
Target Start/End: Original strand, 16657613 - 16657876
Alignment:
Q  18 actactttgtagaggagttcaaaaagaagaataatgtggacattagtaagaacgcaaaacccttatggaggttgagaactgcctgcgagagggcaaagag 117  Q
    |||||||||||||||||||  ||||||||||||| |||||||| |||  |||| ||| | ||||  |||||||||||||||| || ||||||||||||||    
T  16657613 actactttgtagaggagtttcaaaagaagaataaggtggacataagtgggaactcaagagccttgaggaggttgagaactgcatgtgagagggcaaagag 16657712  T
Q  118 gacactctctttcgcctttgtcaccactgttgaggtagattctttatttcagggaatagacttttcttcatctattactcgtgccaagtttgaggaaatt 217  Q
    |||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || || |||||||||||||||||||||    
T  16657713 gacactctcttttgcttttgtcaccactgttgaggtagattctttatttcagggaattgacttttcttcatcaatcacccgtgccaagtttgaggaaatt 16657812  T
Q  218 aatatggaccttttcaacgagtgtatggaaactgttaagagttgtcttagtgattcaaagatgc 281  Q
    |||||||| |||||||| ||||||||| |||||||| ||| ||||||| |||||||||||||||    
T  16657813 aatatggatcttttcaatgagtgtatgaaaactgttgagaattgtcttcgtgattcaaagatgc 16657876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 18 - 244
Target Start/End: Complemental strand, 7542298 - 7542072
Alignment:
Q  18 actactttgtagaggagttcaaaaagaagaataatgtggacattagtaagaacgcaaaacccttatggaggttgagaactgcctgcgagagggcaaagag 117  Q
    ||||||||||| | |||||||| |  ||||| || ||||||||||||  |||  ||||| ||||  |||||||||||||||| || ||||||||||| ||    
T  7542298 actactttgtacaagagttcaagagaaagaacaaagtggacattagtgggaatccaaaagccttgaggaggttgagaactgcttgtgagagggcaaaaag 7542199  T
Q  118 gacactctctttcgcctttgtcaccactgttgaggtagattctttatttcagggaatagacttttcttcatctattactcgtgccaagtttgaggaaatt 217  Q
      |||| ||||||    ||||  ||||| |||||||||||||||||||||| || || |||||||||||||| || | | | |||||||||||||| ||     
T  7542198 atcactttctttccttgttgttgccactattgaggtagattctttatttcaaggcattgacttttcttcatcgatcaatagggccaagtttgaggagatg 7542099  T
Q  218 aatatggaccttttcaacgagtgtatg 244  Q
    |||||||| ||||| ||||||||||||    
T  7542098 aatatggatctttttaacgagtgtatg 7542072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 86 - 271
Target Start/End: Complemental strand, 43625416 - 43625231
Alignment:
Q  86 aggttgagaactgcctgcgagagggcaaagaggacactctctttcgcctttgtcaccactgttgaggtagattctttatttcagggaatagacttttctt 185  Q
    ||||||||||| || |||||||| | ||| |||||||| ||||| || |   ||| |||| ||||||||||||||||||| |  || || ||||| | ||    
T  43625416 aggttgagaacggcatgcgagagaggaaaaaggacactgtcttttgcttcgttcagcactattgaggtagattctttattccgtggtattgacttctttt 43625317  T
Q  186 catctattactcgtgccaagtttgaggaaattaatatggaccttttcaacgagtgtatggaaactgttaagagttgtcttagtgat 271  Q
    |||| || ||||||||||| ||||| ||||| |||||||| ||||||||||||||| || ||||||||||||||||||||| ||||    
T  43625316 catcaatcactcgtgccaaatttgatgaaataaatatggatcttttcaacgagtgtttgaaaactgttaagagttgtcttattgat 43625231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 72 - 280
Target Start/End: Complemental strand, 14703426 - 14703218
Alignment:
Q  72 caaaacccttatggaggttgagaactgcctgcgagagggcaaagaggacactctctttcgcctttgtcaccactgttgaggtagattctttatttcaggg 171  Q
    ||||| ||||| |||| |||||||| || |||||||||||||| || ||||| ||||||    ||||| ||||| ||||||||||| ||||||||||  |    
T  14703426 caaaagccttaaggagcttgagaaccgcttgcgagagggcaaaaagaacactttctttccaagttgtcgccactattgaggtagatgctttatttcaatg 14703327  T
Q  172 aatagacttttcttcatctattactcgtgccaagtttgaggaaattaatatggaccttttcaacgagtgtatggaaactgttaagagttgtcttagtgat 271  Q
     || |||||||||||||| || | | | ||||||||||| ||||| ||||||||| |||| || |||||| || | | |||| |||||||||||| ||||    
T  14703326 cattgacttttcttcatcgatcaatagggccaagtttgaagaaatgaatatggacttttttaatgagtgtgtgaagattgttgagagttgtcttattgat 14703227  T
Q  272 tcaaagatg 280  Q
     | ||||||    
T  14703226 gctaagatg 14703218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 147 - 280
Target Start/End: Complemental strand, 12234632 - 12234499
Alignment:
Q  147 ttgaggtagattctttatttcagggaatagacttttcttcatctattactcgtgccaagtttgaggaaattaatatggaccttttcaacgagtgtatgga 246  Q
    |||||||||||||||||||| | || || || ||||||||||| || | | | ||||||||||||||||| |||||||| ||| | |  ||||||||| |    
T  12234632 ttgaggtagattctttatttgaaggcattgatttttcttcatcgatcaatagggccaagtttgaggaaatgaatatggatcttcttattgagtgtatgaa 12234533  T
Q  247 aactgttaagagttgtcttagtgattcaaagatg 280  Q
     | |||| ||||||||||||||||| | ||||||    
T  12234532 gattgttgagagttgtcttagtgatgctaagatg 12234499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 147 - 266
Target Start/End: Original strand, 12258806 - 12258925
Alignment:
Q  147 ttgaggtagattctttatttcagggaatagacttttcttcatctattactcgtgccaagtttgaggaaattaatatggaccttttcaacgagtgtatgga 246  Q
    ||||| |||||||||||| | | || || || |||||| |||| || | ||||||||||||||||||||| ||| |||| |||||||| || || ||| |    
T  12258806 ttgagatagattctttatgtgatggcattgatttttctgcatcaatcaatcgtgccaagtttgaggaaataaatttggaacttttcaatgaatgcatgaa 12258905  T
Q  247 aactgttaagagttgtctta 266  Q
     |||||| ||||||||||||    
T  12258906 gactgttgagagttgtctta 12258925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 84 - 280
Target Start/End: Original strand, 16662154 - 16662350
Alignment:
Q  84 ggaggttgagaactgcctgcgagagggcaaagaggacactctctttcgcctttgtcaccactgttgaggtagattctttatttcagggaatagacttttc 183  Q
    |||||||||||||| | || || | ||| || |||||||||||||||   || |||||| || ||||| | |||| |||||   |||  || ||||| ||    
T  16662154 ggaggttgagaacttcttgtgaaaaggcgaaaaggacactctctttcaaattggtcaccgctattgagattgattatttatacgaggacattgacttctc 16662253  T
Q  184 ttcatctattactcgtgccaagtttgaggaaattaatatggaccttttcaacgagtgtatggaaactgttaagagttgtcttagtgattcaaagatg 280  Q
    | ||||  | ||||||| ||||||||| ||||| ||||||| |||||| |||||||||||| | | |||| |||||||| ||   ||||||||||||    
T  16662254 tacatcactcactcgtgtcaagtttgaagaaatcaatatgggcctttttaacgagtgtatgaagattgttgagagttgttttgtggattcaaagatg 16662350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 147 - 214
Target Start/End: Complemental strand, 11999350 - 11999283
Alignment:
Q  147 ttgaggtagattctttatttcagggaatagacttttcttcatctattactcgtgccaagtttgaggaa 214  Q
    |||||||||||||||||||||| || || || ||||||||||| || | ||| || ||||||||||||    
T  11999350 ttgaggtagattctttatttcaaggcattgatttttcttcatccatcaatcgggcaaagtttgaggaa 11999283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 147 - 214
Target Start/End: Original strand, 12245631 - 12245698
Alignment:
Q  147 ttgaggtagattctttatttcagggaatagacttttcttcatctattactcgtgccaagtttgaggaa 214  Q
    |||||||||||||||||||||| || || || ||||||||||| || | ||| || ||||||||||||    
T  12245631 ttgaggtagattctttatttcaaggcattgatttttcttcatccatcaatcgggcaaagtttgaggaa 12245698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 163; Significance: 5e-87; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 18 - 276
Target Start/End: Complemental strand, 8659435 - 8659177
Alignment:
Q  18 actactttgtagaggagttcaaaaagaagaataatgtggacattagtaagaacgcaaaacccttatggaggttgagaactgcctgcgagagggcaaagag 117  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||   ||| ||||| ||||| ||||||||||||||||||| ||||||||||||||    
T  8659435 actactttgtagaggagttcaaaaagaagaataaagtggacattagtggtaacccaaaatccttaaggaggttgagaactgcctgtgagagggcaaagag 8659336  T
Q  118 gacactctctttcgcctttgtcaccactgttgaggtagattctttatttcagggaatagacttttcttcatctattactcgtgccaagtttgaggaaatt 217  Q
    |||||||||||| || |||||||||||||||||||| |||||||||||||||||||||||||| | |||||  || |||||||||| ||||||||||||     
T  8659335 gacactctcttttgcttttgtcaccactgttgaggtcgattctttatttcagggaatagacttctgttcattaatcactcgtgccaggtttgaggaaatg 8659236  T
Q  218 aatatggaccttttcaacgagtgtatggaaactgttaagagttgtcttagtgattcaaa 276  Q
    |||||||| ||||| || ||||||||| |||||||| ||||||||||||| ||||||||    
T  8659235 aatatggatctttttaatgagtgtatgaaaactgttgagagttgtcttagcgattcaaa 8659177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 18 - 279
Target Start/End: Complemental strand, 8654522 - 8654261
Alignment:
Q  18 actactttgtagaggagttcaaaaagaagaataatgtggacattagtaagaacgcaaaacccttatggaggttgagaactgcctgcgagagggcaaagag 117  Q
    |||||||||||||||||||||||||||||||||| ||||| |||||    ||| ||||| ||||| ||||||||||||||||||| ||||||||||| ||    
T  8654522 actactttgtagaggagttcaaaaagaagaataaagtggaaattagcggtaacccaaaatccttaaggaggttgagaactgcctgtgagagggcaaaaag 8654423  T
Q  118 gacactctctttcgcctttgtcaccactgttgaggtagattctttatttcagggaatagacttttcttcatctattactcgtgccaagtttgaggaaatt 217  Q
    || |||||||||  | |||||||||||||||||||||||| ||||||||  |||||| |||||||||||||| || |||||||| || ||||||||||||    
T  8654422 gatactctcttttacttttgtcaccactgttgaggtagatgctttatttatgggaatcgacttttcttcatcaatcactcgtgctaaatttgaggaaatt 8654323  T
Q  218 aatatggaccttttcaacgagtgtatggaaactgttaagagttgtcttagtgattcaaagat 279  Q
    ||||||||| ||||||| ||||||||  | | |||| | |||||||| || |||||||||||    
T  8654322 aatatggactttttcaatgagtgtatcaatattgttgacagttgtctcagagattcaaagat 8654261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 19 - 301
Target Start/End: Complemental strand, 1301531 - 1301249
Alignment:
Q  19 ctactttgtagaggagttcaaaaagaagaataatgtggacattagtaagaacgcaaaacccttatggaggttgagaactgcctgcgagagggcaaagagg 118  Q
    |||||||||||||||||||| |||||||||||| ||||||||||||   |||   ||| ||||| |||||||||||| ||| || ||||||||||| |||    
T  1301531 ctactttgtagaggagttcagaaagaagaataaagtggacattagtggtaaccagaaatccttaaggaggttgagaattgcgtgtgagagggcaaaaagg 1301432  T
Q  119 acactctctttcgcctttgtcaccactgttgaggtagattctttatttcagggaatagacttttcttcatctattactcgtgccaagtttgaggaaatta 218  Q
    ||||||||||| || || |||||||| |||||||| |||||||||||||||||||| ||||| | |||||  || |||||||||||||||||||||||||    
T  1301431 acactctcttttgctttagtcaccaccgttgaggtcgattctttatttcagggaatcgacttctgttcattaatcactcgtgccaagtttgaggaaatta 1301332  T
Q  219 atatggaccttttcaacgagtgtatggaaactgttaagagttgtcttagtgattcaaagatgcgcgggagtgatattgatgat 301  Q
    ||||||| ||||| || |||||||   |||| ||| ||||||||||||| |||||||| ||  ||  ||||||||| ||||||    
T  1301331 atatggatctttttaatgagtgtacaaaaaccgttgagagttgtcttagcgattcaaaaatatgcatgagtgatatcgatgat 1301249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 23 - 279
Target Start/End: Original strand, 10494475 - 10494731
Alignment:
Q  23 tttgtagaggagttcaaaaagaagaataatgtggacattagtaagaacgcaaaacccttatggaggttgagaactgcctgcgagagggcaaagaggacac 122  Q
    ||||| ||||||||||||||||||||||| |||||||| |||  |||  ||||| ||||| ||||||||||||||||||| ||||||||||| |||| ||    
T  10494475 tttgttgaggagttcaaaaagaagaataacgtggacatcagtgggaatccaaaatccttaaggaggttgagaactgcctgtgagagggcaaaaaggatac 10494574  T
Q  123 tctctttcgcctttgtcaccactgttgaggtagattctttatttcagggaatagacttttcttcatctattactcgtgccaagtttgaggaaattaatat 222  Q
    |||||||  | ||||||||||| |||||||| ||| ||||||||  |||||| |||||||||||||| || ||||||||||| |||||||||||||||||    
T  10494575 tctctttttcttttgtcaccaccgttgaggtcgatgctttatttatgggaatcgacttttcttcatcaatcactcgtgccaaatttgaggaaattaatat 10494674  T
Q  223 ggaccttttcaacgagtgtatggaaactgttaagagttgtcttagtgattcaaagat 279  Q
     ||| |||||| |||||||||| | | |||| | |||||||| || |||||||||||    
T  10494675 agactttttcatcgagtgtatgaatattgttgacagttgtctcagggattcaaagat 10494731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 18 - 244
Target Start/End: Complemental strand, 8667491 - 8667265
Alignment:
Q  18 actactttgtagaggagttcaaaaagaagaataatgtggacattagtaagaacgcaaaacccttatggaggttgagaactgcctgcgagagggcaaagag 117  Q
    |||| ||||| |||||||| |||||||||||||| |||||||| ||| ||||| ||||| ||||| ||||||||||||||||||| ||||||||||| ||    
T  8667491 actattttgttgaggagttaaaaaagaagaataaagtggacatcagtcagaacccaaaatccttaaggaggttgagaactgcctgtgagagggcaaaaag 8667392  T
Q  118 gacactctctttcgcctttgtcaccactgttgaggtagattctttatttcagggaatagacttttcttcatctattactcgtgccaagtttgaggaaatt 217  Q
    || ||||||||| || ||||| |||||||||||||||||| ||||||||  |||||| ||||||| |||||| ||||||||||| || ||||||||| ||    
T  8667391 gatactctcttttgcttttgttaccactgttgaggtagatgctttatttacgggaatcgacttttgttcatcaattactcgtgctaaatttgaggaactt 8667292  T
Q  218 aatatggaccttttcaacgagtgtatg 244  Q
    || |||||| ||||||| |||||||||    
T  8667291 aacatggactttttcaatgagtgtatg 8667265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 18 - 279
Target Start/End: Original strand, 13333552 - 13333813
Alignment:
Q  18 actactttgtagaggagttcaaaaagaagaataatgtggacattagtaagaacgcaaaacccttatggaggttgagaactgcctgcgagagggcaaagag 117  Q
    |||| ||||| ||||||||||||||||||||||| || || || |||  |||| ||||| ||||| ||||||||||||||||||| ||||||| ||| ||    
T  13333552 actattttgttgaggagttcaaaaagaagaataacgtcgatatcagtgggaacccaaaatccttaaggaggttgagaactgcctgtgagagggaaaaaag 13333651  T
Q  118 gacactctctttcgcctttgtcaccactgttgaggtagattctttatttcagggaatagacttttcttcatctattactcgtgccaagtttgaggaaatt 217  Q
    || |||||| ||  | ||||||||||||||||| |||||| ||||||||  |||||| |||||||||||||| || ||||||||||| ||||||||||||    
T  13333652 gatactctccttttcttttgtcaccactgttgaagtagatgctttatttatgggaatcgacttttcttcatcaatcactcgtgccaaatttgaggaaatt 13333751  T
Q  218 aatatggaccttttcaacgagtgtatggaaactgttaagagttgtcttagtgattcaaagat 279  Q
    ||||| ||| |||||| |||||||||| | | |||| | |||||||| || |||||||||||    
T  13333752 aatatagactttttcatcgagtgtatgaatattgttgacagttgtctcagggattcaaagat 13333813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 18 - 262
Target Start/End: Complemental strand, 3147336 - 3147092
Alignment:
Q  18 actactttgtagaggagttcaaaaagaagaataatgtggacattagtaagaacgcaaaacccttatggaggttgagaactgcctgcgagagggcaaagag 117  Q
    ||||||||| |  |||||| || |||||||| || || ||||||||| ||||| ||| | ||||| ||||||||| ||| || || || || |||||  |    
T  3147336 actactttgcacgggagtttaagaagaagaacaaggtagacattagtgagaactcaagagccttaaggaggttgaaaacggcgtgtgaaagagcaaaacg 3147237  T
Q  118 gacactctctttcgcctttgtcaccactgttgaggtagattctttatttcagggaatagacttttcttcatctattactcgtgccaagtttgaggaaatt 217  Q
     | ||| ||||| ||  |  |||||||  ||||| |||||||||||||||||||| | ||||| | |||||| || |||||||||||||||||||||||     
T  3147236 aatactatcttttgctgtcatcaccaccattgagatagattctttatttcagggatttgacttattttcatcaatcactcgtgccaagtttgaggaaatc 3147137  T
Q  218 aatatggaccttttcaacgagtgtatggaaactgttaagagttgt 262  Q
    |||||||| |||||||  |||||| ||||||||||||||||||||    
T  3147136 aatatggatcttttcactgagtgtttggaaactgttaagagttgt 3147092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 84 - 271
Target Start/End: Complemental strand, 17267945 - 17267758
Alignment:
Q  84 ggaggttgagaactgcctgcgagagggcaaagaggacactctctttcgcctttgtcaccactgttgaggtagattctttatttcagggaatagacttttc 183  Q
    |||||||||||||||| || || |  ||||| |||||||| |||||||||| ||| |||| ||||||||||||  |||||||| ||||  | || |||||    
T  17267945 ggaggttgagaactgcatgtgaaaaagcaaaaaggacactttctttcgcctctgtgaccaatgttgaggtagacgctttatttaagggtgttgatttttc 17267846  T
Q  184 ttcatctattactcgtgccaagtttgaggaaattaatatggaccttttcaacgagtgtatggaaactgttaagagttgtcttagtgat 271  Q
    ||| || || ||||||||||||||||||||||| ||||||||||||||  | ||||| ||||| | |||| |||  ||||||||||||    
T  17267845 ttcgtcaatcactcgtgccaagtttgaggaaatcaatatggacctttttgatgagtgcatggagattgttgagaagtgtcttagtgat 17267758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 18 - 271
Target Start/End: Complemental strand, 17260313 - 17260060
Alignment:
Q  18 actactttgtagaggagttcaaaaagaagaataatgtggacattagtaagaacgcaaaacccttatggaggttgagaactgcctgcgagagggcaaagag 117  Q
    |||| |||||||||||| ||||||  | ||| ||  ||||||||| |  |||| ||||| ||||| |||||||||||||||| || || |  ||||| ||    
T  17260313 actattttgtagaggagatcaaaagaacgaaaaaattggacattattgggaacccaaaagccttaaggaggttgagaactgcatgtgaaaaagcaaaaag 17260214  T
Q  118 gacactctctttcgcctttgtcaccactgttgaggtagattctttatttcagggaatagacttttcttcatctattactcgtgccaagtttgaggaaatt 217  Q
    |||||| ||||| |||| ||| |||| ||||||||||||  |||||||| ||||  |  | |||||||| || || ||||||||||||||||| |||||     
T  17260213 gacactttcttttgcctctgtgaccaatgttgaggtagacgctttatttaagggtgttaatttttcttcgtcaatcactcgtgccaagtttgaagaaatc 17260114  T
Q  218 aatatggaccttttcaacgagtgtatggaaactgttaagagttgtcttagtgat 271  Q
    ||||||||||||||  | ||||| ||||| | |||| |||  ||||||||||||    
T  17260113 aatatggaccttttttatgagtgcatggagattgttgagaagtgtcttagtgat 17260060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 18 - 264
Target Start/End: Original strand, 27830971 - 27831217
Alignment:
Q  18 actactttgtagaggagttcaaaaagaagaataatgtggacattagtaagaacgcaaaacccttatggaggttgagaactgcctgcgagagggcaaagag 117  Q
    |||| ||||| |||| |||||| |||||||| |  ||||||||||||  |||| ||| | ||||  ||||| |||||||    || |||| |||||| ||    
T  27830971 actattttgtggaggtgttcaagaagaagaaaagagtggacattagtgggaacccaagagccttgaggaggctgagaacctaatgtgagaaggcaaaaag 27831070  T
Q  118 gacactctctttcgcctttgtcaccactgttgaggtagattctttatttcagggaatagacttttcttcatctattactcgtgccaagtttgaggaaatt 217  Q
    ||||||||||||  |  ||| ||| ||| ||||| ||||| | |||||| |||| || ||||| | ||||   || |||||||| ||||||||||||||     
T  27831071 gacactctctttttctgttgacactactattgagatagatgccttatttgagggcattgacttcttttcaatgatcactcgtgcaaagtttgaggaaatc 27831170  T
Q  218 aatatggaccttttcaacgagtgtatggaaactgttaagagttgtct 264  Q
    ||||||||||||||||| || |||||||| |||||| ||||||||||    
T  27831171 aatatggaccttttcaatgaatgtatggagactgttgagagttgtct 27831217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 41 - 280
Target Start/End: Complemental strand, 8646926 - 8646687
Alignment:
Q  41 aagaagaataatgtggacattagtaagaacgcaaaacccttatggaggttgagaactgcctgcgagagggcaaagaggacactctctttcgcctttgtca 140  Q
    |||||||| || |||||||||| |   ||| ||| | ||||| ||||||||||||| || |||||||| ||||| |||||||| ||||| || | |  ||    
T  8646926 aagaagaacaaggtggacattactggaaactcaagagccttaaggaggttgagaacggcatgcgagagagcaaaaaggacactatcttttgcttcttgca 8646827  T
Q  141 ccactgttgaggtagattctttatttcagggaatagacttttcttcatctattactcgtgccaagtttgaggaaattaatatggaccttttcaacgagtg 240  Q
    ||||  ||||  |||||||||||||| | || || ||||||  |||||| || ||||||||||| ||||| | ||| |||||||| || |||| ||| ||    
T  8646826 ccaccattgaattagattctttatttaatggcattgactttatttcatcaatcactcgtgccaaatttgacgcaatcaatatggatctgttcatcgaatg 8646727  T
Q  241 tatggaaactgttaagagttgtcttagtgattcaaagatg 280  Q
    | ||||||||||| ||||||||| || |||| | ||||||    
T  8646726 tttggaaactgttgagagttgtcataatgatgccaagatg 8646687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 86 - 265
Target Start/End: Complemental strand, 6789516 - 6789337
Alignment:
Q  86 aggttgagaactgcctgcgagagggcaaagaggacactctctttcgcctttgtcaccactgttgaggtagattctttatttcagggaatagacttttctt 185  Q
    |||||||||||||| || || ||||| || |||  ||||||||| |   | ||||| ||| |||||||||| |||||||||||||| || |||||   ||    
T  6789516 aggttgagaactgcgtgtgaaagggccaaaagggtactctcttttgttgtcgtcactactattgaggtagactctttatttcagggcatcgacttcattt 6789417  T
Q  186 catctattactcgtgccaagtttgaggaaattaatatggaccttttcaacgagtgtatggaaactgttaagagttgtctt 265  Q
    ||||  ||||||| ||||||||||||||||| ||||||||  |||| || ||||||||| | || ||| |||||||||||    
T  6789416 catcacttactcgggccaagtttgaggaaatcaatatggatatttttaatgagtgtatgaagaccgttgagagttgtctt 6789337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 137 - 279
Target Start/End: Complemental strand, 8616634 - 8616492
Alignment:
Q  137 gtcaccactgttgaggtagattctttatttcagggaatagacttttcttcatctattactcgtgccaagtttgaggaaattaatatggaccttttcaacg 236  Q
    ||||| ||| ||||| | |||| ||||| | |||| || || || |||||||| || |||||||  |||||||||||||| |||||||||||||| ||||    
T  8616634 gtcactactattgagattgattatttatgtgagggcatcgatttctcttcatcaatcactcgtgttaagtttgaggaaatcaatatggacctttttaacg 8616535  T
Q  237 agtgtatggaaactgttaagagttgtcttagtgattcaaagat 279  Q
    |||||||  | |||||| |||||||| ||| |||||| |||||    
T  8616534 agtgtataaagactgttgagagttgttttaatgattctaagat 8616492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 195 - 280
Target Start/End: Original strand, 8673894 - 8673979
Alignment:
Q  195 ctcgtgccaagtttgaggaaattaatatggaccttttcaacgagtgtatggaaactgttaagagttgtcttagtgattcaaagatg 280  Q
    |||||||||||||||||||||| |||||  | ||||||||||||||| ||||||||||| ||| |||||||| |||| | ||||||    
T  8673894 ctcgtgccaagtttgaggaaatcaatatcaatcttttcaacgagtgtttggaaactgttgagaattgtcttattgatgccaagatg 8673979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 20 - 265
Target Start/End: Complemental strand, 8545703 - 8545458
Alignment:
Q  20 tactttgtagaggagttcaaaaagaagaataatgtggacattagtaagaacgcaaaacccttatggaggttgagaactgcctgcgagagggcaaagagga 119  Q
    ||||||||  |||||||||| | |||||| |||| ||| ||||||  |||| || || ||||  ||||||||||||||||||| |||| |||||| ||||    
T  8545703 tactttgtgaaggagttcaagaggaagaacaatgaggatattagtcggaacccagaagccttgaggaggttgagaactgcctgtgagaaggcaaaaagga 8545604  T
Q  120 cactctctttcgcctttgtcaccactgttgaggtagattctttatttcagggaatagacttttcttcatctattactcgtgccaagtttgaggaaattaa 219  Q
    |||| || | || |  ||   ||||  ||||  ||||| |||||| ||| || || ||||||| |||||  || ||||| |||||||||||| || | ||    
T  8545603 cactttcatacgacactgaggccacaattgacctagatgctttatatcaaggtattgacttttgttcatgcatcactcgggccaagtttgagcaattgaa 8545504  T
Q  220 tatggaccttttcaacgagtgtatggaaactgttaagagttgtctt 265  Q
    ||||||||| ||  |  |||||||||| ||||||||  ||||||||    
T  8545503 tatggacctctttgaaaagtgtatggacactgttaattgttgtctt 8545458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 182 - 279
Target Start/End: Original strand, 8585966 - 8586063
Alignment:
Q  182 tcttcatctattactcgtgccaagtttgaggaaattaatatggaccttttcaacgagtgtatggaaactgttaagagttgtcttagtgattcaaagat 279  Q
    |||||||| || || |||| ||||||||||||||| |||||||||||||| || ||||||||  | |||||| ||||||||||||  ||||| |||||    
T  8585966 tcttcatcaatcacgcgtgtcaagtttgaggaaatcaatatggacctttttaatgagtgtataaatactgttgagagttgtcttaccgattctaagat 8586063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 134 - 266
Target Start/End: Complemental strand, 8664289 - 8664159
Alignment:
Q  134 tttgtcaccactgttgaggtagattctttatttcagggaatagacttttcttcatctattactcgtgccaagtttgaggaaattaatatggaccttttca 233  Q
    |||||||||||| || ||||||||||||| |||||| |  || |||| | || |||  |  |||||||||||| ||| ||||| |||||||| |||||||    
T  8664289 tttgtcaccactattaaggtagattctttgtttcagcgcttaaacttctttttatccttcgctcgtgccaagtatgatgaaatcaatatggatcttttca 8664190  T
Q  234 acgagtgtatggaaactgttaagagttgtctta 266  Q
    ||  |||| ||||||||||| ||||||||||||    
T  8664189 ac--gtgtttggaaactgttgagagttgtctta 8664159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 33 - 265
Target Start/End: Complemental strand, 8570368 - 8570136
Alignment:
Q  33 agttcaaaaagaagaataatgtggacattagtaagaacgcaaaacccttatggaggttgagaactgcctgcgagagggcaaagaggacactctctttcgc 132  Q
    ||||||| |||||||| || | ||| ||||||| |||| ||||| ||||  ||||||| ||||| || || ||||||||||| |||||||| || |  |     
T  8570368 agttcaagaagaagaacaacgaggatattagtaggaacccaaaagccttgaggaggttaagaacagcttgtgagagggcaaaaaggacactttcatatga 8570269  T
Q  133 ctttgtcaccactgttgaggtagattctttatttcagggaatagacttttcttcatctattactcgtgccaagtttgaggaaattaatatggaccttttc 232  Q
       ||   ||||  ||||| ||||| || ||| | ||||||| |||||   |||||| || || || ||||||||||||||||| |||||| |||| ||     
T  8570268 tactgaggccacaattgagctagatgctatatataagggaattgacttcagttcatcaataacccgggccaagtttgaggaaatgaatatgaacctcttt 8570169  T
Q  233 aacgagtgtatggaaactgttaagagttgtctt 265  Q
     |  ||||||||||||||||||| |||||||||    
T  8570168 gaaaagtgtatggaaactgttaatagttgtctt 8570136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 123
Target Start/End: Original strand, 29577793 - 29577873
Alignment:
Q  43 gaagaataatgtggacattagtaagaacgcaaaacccttatggaggttgagaactgcctgcgagagggcaaagaggacact 123  Q
    |||||| |||||||||||||||  |||| ||||| | ||| ||| | |||||||||| || ||||||||||||||| ||||    
T  29577793 gaagaacaatgtggacattagtttgaacccaaaagctttaaggaagctgagaactgcttgtgagagggcaaagagggcact 29577873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 280
Target Start/End: Complemental strand, 8537942 - 8537846
Alignment:
Q  184 ttcatctattactcgtgccaagtttgaggaaattaatatggaccttttcaacgagtgtatggaaactgttaagagttgtcttagtgattcaaagatg 280  Q
    |||||| || ||||| |||||||||||| || | || |||||||| ||  |  |||||||| ||||||||||||||||| ||| |||| | ||||||    
T  8537942 ttcatcaatcactcgggccaagtttgagcaactcaacatggacctctttgaaaagtgtatgaaaactgttaagagttgttttaatgatgctaagatg 8537846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 231
Target Start/End: Complemental strand, 8664971 - 8664919
Alignment:
Q  179 ttttcttcatctattactcgtgccaagtttgaggaaattaatatggacctttt 231  Q
    |||| |||||| || |||||||| | |||||||||||| ||||||||||||||    
T  8664971 ttttgttcatcaataactcgtgcgaggtttgaggaaatcaatatggacctttt 8664919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 123
Target Start/End: Original strand, 29581962 - 29582042
Alignment:
Q  43 gaagaataatgtggacattagtaagaacgcaaaacccttatggaggttgagaactgcctgcgagagggcaaagaggacact 123  Q
    |||||| ||| |||||||||||  |||| ||||| | ||| ||| | ||||||| || || ||||||||||||||||||||    
T  29581962 gaagaacaatttggacattagtgggaacccaaaagctttaaggaagctgagaacagcttgtgagagggcaaagaggacact 29582042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 107; Significance: 1e-53; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 18 - 244
Target Start/End: Original strand, 9335987 - 9336213
Alignment:
Q  18 actactttgtagaggagttcaaaaagaagaataatgtggacattagtaagaacgcaaaacccttatggaggttgagaactgcctgcgagagggcaaagag 117  Q
    |||| ||||| || ||||| |||||||||||||| |||||||| |   ||||| ||||| ||||| ||||||||||||||||||| ||||||||||| ||    
T  9335987 actattttgtggaagagttaaaaaagaagaataaagtggacatcaagcagaacccaaaatccttaaggaggttgagaactgcctgtgagagggcaaaaag 9336086  T
Q  118 gacactctctttcgcctttgtcaccactgttgaggtagattctttatttcagggaatagacttttcttcatctattactcgtgccaagtttgaggaaatt 217  Q
    || ||| ||||| || ||||| |||||||||||||||||| ||||||||  |||||| |||||||||||||| || ||||||||||| ||||||||| ||    
T  9336087 gatactgtcttttgcttttgttaccactgttgaggtagatgctttatttatgggaatcgacttttcttcatcaatcactcgtgccaaatttgaggaactt 9336186  T
Q  218 aatatggaccttttcaacgagtgtatg 244  Q
    || |||||| ||||||| |||||||||    
T  9336187 aacatggactttttcaatgagtgtatg 9336213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 88 - 277
Target Start/End: Complemental strand, 30775254 - 30775065
Alignment:
Q  88 gttgagaactgcctgcgagagggcaaagaggacactctctttcgcctttgtcaccactgttgaggtagattctttatttcagggaatagacttttcttca 187  Q
    |||||||||||| || || | |||||| ||||||||||| |||   ||| ||||   ||||||| |||||  ||||||||| |  || ||||||||||||    
T  30775254 gttgagaactgcatgtgaaaaggcaaaaaggacactctccttcaagtttctcacatttgttgagatagataatttatttcaagacattgacttttcttca 30775155  T
Q  188 tctattactcgtgccaagtttgaggaaattaatatggaccttttcaacgagtgtatggaaactgttaagagttgtcttagtgattcaaag 277  Q
    || || ||||||| ||||||||||||||| |||||||||||||| || ||||||||  | |||||| |||||||||||| ||||||||||    
T  30775154 tcaatcactcgtgtcaagtttgaggaaatcaatatggacctttttaatgagtgtatacagactgttgagagttgtcttactgattcaaag 30775065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 89 - 244
Target Start/End: Complemental strand, 35132458 - 35132303
Alignment:
Q  89 ttgagaactgcctgcgagagggcaaagaggacactctctttcgcctttgtcaccactgttgaggtagattctttatttcagggaatagacttttcttcat 188  Q
    ||||||||||||||| |||||||||||||  |||| ||||||    ||||  ||| | |||| ||||||||||||||||| || || || ||||||||||    
T  35132458 ttgagaactgcctgctagagggcaaagagatcactttctttccttgttgttgccaatattgaagtagattctttatttcaaggcattgatttttcttcat 35132359  T
Q  189 ctattactcgtgccaagtttgaggaaattaatatggaccttttcaacgagtgtatg 244  Q
    | || | ||| ||||||||||||||||| |||   |||||||| || |||||||||    
T  35132358 caatcaatcgcgccaagtttgaggaaatgaatgcagacctttttaatgagtgtatg 35132303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 79; Significance: 6e-37; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 18 - 264
Target Start/End: Complemental strand, 28219990 - 28219744
Alignment:
Q  18 actactttgtagaggagttcaaaaagaagaataatgtggacattagtaagaacgcaaaacccttatggaggttgagaactgcctgcgagagggcaaagag 117  Q
    ||||||| | ||||||||| || |||||||| || |||||||||| |   ||| ||| | ||||| ||||||||||||| || ||| |||| ||||| ||    
T  28219990 actacttcgcagaggagtttaagaagaagaacaaggtggacattactggaaactcaagagccttaaggaggttgagaacagcgtgcaagagagcaaaaag 28219891  T
Q  118 gacactctctttcgcctttgtcaccactgttgaggtagattctttatttcagggaatagacttttcttcatctattactcgtgccaagtttgaggaaatt 217  Q
    |||||| ||||| ||  ||||| ||||  |||||||||||||||||||| | || || || || | |||||| ||||||||||| ||||||||||||||     
T  28219890 gacactatcttttgctgttgtcgccaccattgaggtagattctttatttgaaggcattgatttcttttcatcaattactcgtgctaagtttgaggaaatc 28219791  T
Q  218 aatatggaccttttcaacgagtgtatggaaactgttaagagttgtct 264  Q
    |||||||| |||||||| |||||| || |||||||| |||| |||||    
T  28219790 aatatggatcttttcaatgagtgtttgaaaactgttgagaggtgtct 28219744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 18 - 280
Target Start/End: Complemental strand, 43744888 - 43744626
Alignment:
Q  18 actactttgtagaggagttcaaaaagaagaataatgtggacattagtaagaacgcaaaacccttatggaggttgagaactgcctgcgagagggcaaagag 117  Q
    ||||||| | ||||||||| || |||||||| || |||||||||| |   ||| ||| | | ||| ||||||||||||| || ||||| || ||||| ||    
T  43744888 actacttcgcagaggagtttaagaagaagaacaaggtggacattactggaaacccaagagcattaaggaggttgagaacagcatgcgaaagagcaaaaag 43744789  T
Q  118 gacactctctttcgcctttgtcaccactgttgaggtagattctttatttcagggaatagacttttcttcatctattactcgtgccaagtttgaggaaatt 217  Q
    |||| | ||||| ||  ||||||||||| |||||||||||||||||||| |||| || || || | | || | || |||||| | ||||||||||||||     
T  43744788 gacattatcttttgctgttgtcaccactattgaggtagattctttatttgagggcattgatttctttacaacaatcactcgtactaagtttgaggaaatc 43744689  T
Q  218 aatatggaccttttcaacgagtgtatggaaactgttaagagttgtcttagtgattcaaagatg 280  Q
    |||||||| || |||||||||||| || ||| |||| |||||||||||| |||| | ||||||    
T  43744688 aatatggatctcttcaacgagtgtttgaaaattgttgagagttgtcttactgatgccaagatg 43744626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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