View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1507_high_34 (Length: 307)
Name: NF1507_high_34
Description: NF1507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1507_high_34 |
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Alignment Details
Target: chr8 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 305
Target Start/End: Original strand, 44721570 - 44721874
Alignment:
| Q |
1 |
aaatgtacaaaaggagttagcttgcactagaagttggcaagcctaatttggaatagggtatataatatgacccttcagttttaacgccaccctttattga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44721570 |
aaatgtacaaaaggagttagcttgcactagaagttggcaagcgtaatttggaatagggtatataatatgacccttcagttttaacgccaccctttattga |
44721669 |
T |
|
| Q |
101 |
ataaatgaatgcagccaggaagtaattaacttgagaaagttatcagatacttcagcaaaaacatgacgataaacggataaaactgaagcttacagaccag |
200 |
Q |
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| T |
44721670 |
ataaatgaatgcagccaggaagtaattaacttgagaaagttatcagatacttcagcaaaaacatgacgataaacggataaaactgaagcttacagaccag |
44721769 |
T |
|
| Q |
201 |
taatgttgcgaacttcaatcgctagcctaatacagatcaatgacatcctaaattgaactttaataaagtcaatcctaatttaaaaactaaatatcaatca |
300 |
Q |
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| T |
44721770 |
taatgttgcgaacttcaagcgctagcctaatacagatcaatgacatcctaaattgaactttaataaagtcaatcctaatttaaaaactacatatcaatca |
44721869 |
T |
|
| Q |
301 |
tcaaa |
305 |
Q |
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||||| |
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| T |
44721870 |
tcaaa |
44721874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 38673206 - 38673267
Alignment:
| Q |
1 |
aaatgtacaaaaggagttagcttgcactagaagttggcaagcctaatttggaatagggtata |
62 |
Q |
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| T |
38673206 |
aaatgtacaaaaggagttagcttgtactagaactttgcaaacataattaggaatagggtata |
38673267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 207 - 272
Target Start/End: Original strand, 38673451 - 38673516
Alignment:
| Q |
207 |
tgcgaacttcaatcgctagcctaatacagatcaatgacatcctaaattgaactttaataaagtcaa |
272 |
Q |
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| T |
38673451 |
tgcgaacttcaagcgctaaactaatacagattagtgacatcctaaactgaaccttaatgaagtcaa |
38673516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 131 - 183
Target Start/End: Original strand, 38673359 - 38673411
Alignment:
| Q |
131 |
ttgagaaagttatcagatacttcagcaaaaacatgacgataaacggataaaac |
183 |
Q |
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||||||| ||||| ||| |||||||||||||| ||||||||||||||||||| |
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| T |
38673359 |
ttgagaacattatccgatgcttcagcaaaaacaagacgataaacggataaaac |
38673411 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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