View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1507_high_57 (Length: 241)
Name: NF1507_high_57
Description: NF1507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1507_high_57 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 18 - 241
Target Start/End: Original strand, 9033354 - 9033574
Alignment:
| Q |
18 |
aggcatcgcattcccaaataattgaaattgatggtactggtgttgttaagttgaactgtgaacacacctttaatacacttttatatgggtgtaactatat |
117 |
Q |
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| T |
9033354 |
aggcatcgcattcccaaataattgaaattgatggtactggtgttgttaagttgaactgtgaacacacctttaatacacttttatatgggtgtaactatat |
9033453 |
T |
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| Q |
118 |
ttatagaagatttacataatttgataggttcgacatgaattttaactaataaaatataatgtcaaaagttgtgnnnnnnnnnnnnnacattctattaata |
217 |
Q |
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| T |
9033454 |
ttatagaagatttacataatttgataggttcgacatgaattttaactaataaaatataatgtcaaaaattgtg---ttttttttttacattctattaata |
9033550 |
T |
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| Q |
218 |
aatgagagtaaataagcaatttcc |
241 |
Q |
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| T |
9033551 |
aatgagagtaaataagcaatttcc |
9033574 |
T |
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