View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1507_high_6 (Length: 578)
Name: NF1507_high_6
Description: NF1507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1507_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 31 - 570
Target Start/End: Original strand, 32280002 - 32280563
Alignment:
| Q |
31 |
ctgatctggagataaaatgacaaaaactatcttaaatttacagatacaattgtgtcgtctctggtaaaagtatatagtctaacaatatcagcattatcgg |
130 |
Q |
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| T |
32280002 |
ctgatctggagataaaatgacaaaaactatcttaaatttacatatacaattgtgtcgtctctggtaaaagtatatagtctaacaatatcagcattatcgg |
32280101 |
T |
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| Q |
131 |
tcgaggtagaccataaggactctaggtctaattctaaatgaatatatgaagagtccatgaaagtgatagg--nnnnnnnnngctttttatgtggatcgaa |
228 |
Q |
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| T |
32280102 |
tcgaggtagaccataaggactctaggtctaattctaaatgaatatatgaagagtccatgaaagtgataggaaaaaaaaaaagctttttatgtggatcgaa |
32280201 |
T |
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| Q |
229 |
gatttgaataaaagaataattgttatttagtctaatttatgaaagtgatgga-nnnnnnngacgaaaaatgaaagtgatggttggttcacggtaccaaaa |
327 |
Q |
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| T |
32280202 |
gatttgaataaaagaataattgttatttagtctaatttatgaaagtgatgaattttttttgacgaaaaatgaaagtgatggttggttcacggtaccaaaa |
32280301 |
T |
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| Q |
328 |
gaaatgcattgaaaatatcacttttcctacttcaattcttgtttgatccttcaaagaatatgaactaaagaaagcttcagtcccaaaacgttgaatgaat |
427 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32280302 |
gaaatgcattgaaaatattacttttcctacttcaattcttgtttgatccttcaaagaatatgaactaaagaaagcttcagtcccaaaacgttgaatgaat |
32280401 |
T |
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| Q |
428 |
aaaac---------------tatacatttggaggttgcaaagggttggcgattccttactcaatggtgtatcctaattttcaagattcatcaaaatcttt |
512 |
Q |
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||||| ||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32280402 |
aaaactataaaagaatggaatatacatttggaggttgcaaaggattggtgattccttactcaatggtgtatcctaattttcaagattcatcaaaatcttt |
32280501 |
T |
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| Q |
513 |
aga--agagaggaaaaatgagagaat--aaataaactaaaagtaaatgacaatagtattatc |
570 |
Q |
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||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
32280502 |
agaagagagaggaaaaatgagagaataaaaataaactaaaagtaaatgacaatagtattatc |
32280563 |
T |
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