View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1507_high_60 (Length: 236)
Name: NF1507_high_60
Description: NF1507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1507_high_60 |
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Alignment Details
Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 14 - 221
Target Start/End: Complemental strand, 1180377 - 1180170
Alignment:
| Q |
14 |
caaaggatgcaagttcatacctaagttatcaccaactttgaaagtttttccagaagcccatttggtgtaatcaactccttgattccatccattggcatca |
113 |
Q |
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| T |
1180377 |
caaaggatgcaagttcatacctaagttatcaccaactttgaaagtttttccagaagcccatttggtgtaatcaactccttgagtccatccattggcatca |
1180278 |
T |
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| Q |
114 |
ccaacagtgaaatcagttgcaaatgcataaggaaaggccaataaaagaacaaagaaagaagctatcattgatgtactcatgcctataaactttagttctc |
213 |
Q |
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| T |
1180277 |
ccaacagtgaaatcagttgcaaatgcataaggaaaggccaataaaagaacaaagaaagaagctatcattgatgtactcatgcctataaactttagttctc |
1180178 |
T |
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| Q |
214 |
aaaatgaa |
221 |
Q |
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|||||||| |
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| T |
1180177 |
aaaatgaa |
1180170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 29 - 221
Target Start/End: Complemental strand, 1187378 - 1187186
Alignment:
| Q |
29 |
catacctaagttatcaccaactttgaaagtttttccagaagcccatttggtgtaatcaactccttgattccatccattggcatcaccaacagtgaaatca |
128 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |
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| T |
1187378 |
catacctaagttatcaccaactttgaaagtttttccagaagcccatttggtgtaatcaactcctagattccatccattggcatcaccaacggtgaaatca |
1187279 |
T |
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| Q |
129 |
gttgcaaatgcataaggaaaggccaataaaagaacaaagaaagaagctatcattgatgtactcatgcctataaactttagttctcaaaatgaa |
221 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
1187278 |
gttgcaaatgcataaggaaaggccaacaaaagaacaaagaaagaagctatcattgatgtattcatgcctataaactttagttctcaaaatgaa |
1187186 |
T |
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