View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1507_high_63 (Length: 236)
Name: NF1507_high_63
Description: NF1507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1507_high_63 |
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Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 41119108 - 41119340
Alignment:
| Q |
1 |
tacagtgaccatgaacatcctagctactagcatctttgtactattgaaatttgatcattctgcgctaaaagttatacggtgttgtgcatcattactaaaa |
100 |
Q |
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| T |
41119108 |
tacagtgaccatgaacatcctagctactagcatctttgtactattgaaatttgatcattctgcgctaaaagttatacggtgttgtgcatcattactaaaa |
41119207 |
T |
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| Q |
101 |
gaaaggtcataatcatttgcatcggtgaaactagattccaatttgtatttttgagagctttcagaagttataacaaaatgatgaatgagatatctgttct |
200 |
Q |
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| T |
41119208 |
gaaaggtcataatcatttgcatcggtgaaactagattccaatttgtattattgagagctttcagaagttataacaaaatgatgaattagatatctgttct |
41119307 |
T |
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| Q |
201 |
gcagctcttgcttactcattctcatctagtcat |
233 |
Q |
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| T |
41119308 |
gcaggtcttgcttactccttctcatctagtcat |
41119340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 121 - 229
Target Start/End: Original strand, 41125731 - 41125842
Alignment:
| Q |
121 |
atcggtgaaactagattccaatttgtatttttgagagctttcagaagttataacaaaatgatgaat---gagatatctgttctgcagctcttgcttactc |
217 |
Q |
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| T |
41125731 |
atcggtgaagcacgattccaattcgtactattcagagctttcagaagttataattgaatgatgaatattgagatatctgttctgcaggtcttgctgacac |
41125830 |
T |
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| Q |
218 |
attctcatctag |
229 |
Q |
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| T |
41125831 |
cttctcatctag |
41125842 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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