View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1507_high_74 (Length: 209)
Name: NF1507_high_74
Description: NF1507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1507_high_74 |
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Alignment Details
Target: chr3 (Bit Score: 182; Significance: 1e-98; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 10 - 191
Target Start/End: Complemental strand, 31876615 - 31876434
Alignment:
| Q |
10 |
gaagaatatgaaaatcaacatgggaattccaatagttacactcctccttcttctacttgtttctataatctccccatcccagaattatcatttcataatc |
109 |
Q |
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| T |
31876615 |
gaagaatatgaaaatcaacatgggaattccaatagttacactcctccttcttctacttgtttctataatctccccatcccagaattatcatttcataatc |
31876516 |
T |
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| Q |
110 |
tcattgcttctactgttttaccccttacaaaacagtttgtgtcacctaacgggtaggccatcaatgccatttatgtatcctc |
191 |
Q |
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| T |
31876515 |
tcattgcttctactgttttaccccttacaaaacagtttgtgtcacctaacgggtaggccatcaatgccatttatgtatcctc |
31876434 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 87
Target Start/End: Original strand, 885824 - 885876
Alignment:
| Q |
35 |
attccaatagttacactcctccttcttctacttgtttctataatctccccatc |
87 |
Q |
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| T |
885824 |
attccactagctacactcctccttttgctacttatttctataatttccccatc |
885876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 51
Target Start/End: Complemental strand, 31936526 - 31936490
Alignment:
| Q |
15 |
atatgaaaatcaacatgggaattccaatagttacact |
51 |
Q |
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| T |
31936526 |
atatgaaaatcaatatgggaattccactagttacact |
31936490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 34 - 87
Target Start/End: Original strand, 31899335 - 31899388
Alignment:
| Q |
34 |
aattccaatagttacactcctccttcttctacttgtttctataatctccccatc |
87 |
Q |
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| T |
31899335 |
aattccactagctacactcctccttctgctactcatttctataatttccccatc |
31899388 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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