View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1507_high_9 (Length: 528)
Name: NF1507_high_9
Description: NF1507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1507_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 359; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 18 - 518
Target Start/End: Complemental strand, 43131606 - 43131129
Alignment:
| Q |
18 |
ccaattttctccatgtttaactcattcatgttattcattatgttcttagcagagtccaattccttccagaatgaatcgtaacgatgaggaatactgcnnn |
117 |
Q |
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| T |
43131606 |
ccaattttctccatgtttaactcattcatgttattcattatgttcttagcagagtccaattccttccagaatgaatcgtaacgatgaggaatactg---- |
43131511 |
T |
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| Q |
118 |
nnnnnnnnnnnnntaacaagttcaataaatatttcctccgtctcattataagtgtctcattttagttgtacgtaattcattcatatatatatgcaacaaa |
217 |
Q |
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| T |
43131510 |
---taaaacaaaataacaagttcaatatatatttcctccgtctcatt--------------ttagttgtacgtaattcattcatatatat--gcaacaaa |
43131430 |
T |
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| Q |
218 |
cctggcaagtcgagtatagaacaattgtttggctagtgattggcacttttcaatagtaggtggttcttggacatagtgtttgttcctctccatcaacagc |
317 |
Q |
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| T |
43131429 |
cctggcaagtcgagtatagaacaattgtttggccagtgattgacacttttcaatagtaggtggttcttggacatggtgtttgttcctctccatcaacagc |
43131330 |
T |
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| Q |
318 |
ttgaaatgtgaatttatatggtttgccacttctgctgatgcttgagtcgcctttgattgcagctcaggaatctttgatgtcatggatttactatacaaaa |
417 |
Q |
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| T |
43131329 |
ttgaaatgtgaatttatatggtttgccacttctgctgatgcttgagtcgcctttgattgcagctcaggaatctttgatgtcatggatttactatacaaaa |
43131230 |
T |
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| Q |
418 |
ttatattaagatatataaggttcaaaaatttattcaaatctcatcattctgtttttcttttaaatttccacacacaaaccttgctgtatgagtcaccttt |
517 |
Q |
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| T |
43131229 |
ttatattaagatatatatgggtcaaaaatttattcaaatctcatcattctgtttttcttttaaatttccacacacaaaccttgttgtatgagtcaccttt |
43131130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 356 - 417
Target Start/End: Complemental strand, 43130508 - 43130447
Alignment:
| Q |
356 |
tgcttgagtcgcctttgattgcagctcaggaatctttgatgtcatggatttactatacaaaa |
417 |
Q |
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| T |
43130508 |
tgcttgagtcacctttaattgcagctgaggaatctttgaagtcattagttcactatacaaaa |
43130447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 152 - 188
Target Start/End: Original strand, 33931910 - 33931946
Alignment:
| Q |
152 |
cctccgtctcattataagtgtctcattttagttgtac |
188 |
Q |
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| T |
33931910 |
cctccgtttcattataagtgtctcatttgagttgtac |
33931946 |
T |
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