View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1507_low_1 (Length: 687)
Name: NF1507_low_1
Description: NF1507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1507_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 21 - 674
Target Start/End: Complemental strand, 13744612 - 13743976
Alignment:
| Q |
21 |
taagtaaatgtatcggtctatgttacattattcaacaacaaacgtgaagacgtaatgaatgcccaacttcaaaccaaatgggaggtcaaacctgagagat |
120 |
Q |
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|||| |||||||| ||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
13744612 |
taagaaaatgtattggtctatgttacattattcaacaacaaacgtgatgacataatcaatgcccaacttcaaaccaaatgggagatcaaacctgagagat |
13744513 |
T |
|
| Q |
121 |
gtgaagcaaagtgtgcgtgcatgtatagcacagcatcaaaaacataaatgtgataatgcaatggtcgtagagtaacacagctcttccacaaataaatcat |
220 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| |||| |
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| T |
13744512 |
ctgaaccaaagtgtgcgtgcatgtatagcacagcatcaaaaacataaatgtggtaatgcaatggtcgtaaagtaacacagctcttccacaaataattcat |
13744413 |
T |
|
| Q |
221 |
tagcaaaaataaagacaagctcaacataaagcaagagaagatctatttaagtaaaatttcacaattggatnnnnnnnngcactaaaacttttgaagttta |
320 |
Q |
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| |||||||||||||| || |||||||||||||||||| | ||||||||||||||||| || |||||||| |||||||||| | ||||||| |
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| T |
13744412 |
tggcaaaaataaagacgagttcaacataaagcaagagagggtctatttaagtaaaattacataattggataaaaaaaaccactaaaactatcaaagttta |
13744313 |
T |
|
| Q |
321 |
caaaataaacatagacttaaaaatcttaccgaagtcca-gtcagatgatgatccttcttcaatattactgttg-cagcttcacctggacgcttcattact |
418 |
Q |
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|||||||||||| ||| ||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
13744312 |
caaaataaacatggacataaaaatcttaccaaagtccaggtcagatgatgatccttcttcaatattactgttgtcagcttcacctggacgcttcattact |
13744213 |
T |
|
| Q |
419 |
gattccatatctttgagaaattgatccgcatcaaagttcacttccttattccttcacaagtcccaatataaatagatatcatcgtaatgaagtaatatag |
518 |
Q |
| |
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| T |
13744212 |
gattccatctctttgaaaaattgatccacatcaaagttcacttccttattccttcacaagtcccaatataaatacatatcatcacaatgaagtaa-atag |
13744114 |
T |
|
| Q |
519 |
caaaaccacaaaggcaacgttagaaaactggtaatttggtttggatagaaaatgaagatttgattgaattttcaatatgaaaatgaaata-aattattcc |
617 |
Q |
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| T |
13744113 |
caaaaccacagaggtaacgttagaaaaccggtaatttggtttg----gaaaattaag---------------taatataaaaatgaaatagaatgattcc |
13744033 |
T |
|
| Q |
618 |
cactgttgttgggtgaacaaaggaggaagaaatccagtgactcgcgacaagaaaatt |
674 |
Q |
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| T |
13744032 |
cactgttgttgggtgaacaaaggaagaagaaatccagtggctcaatacaagaaaatt |
13743976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 359; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 252 - 673
Target Start/End: Original strand, 52268863 - 52269285
Alignment:
| Q |
252 |
caagagaagatctatttaagtaaaatttcacaattggatnnnnnnnngcactaaaacttttgaagtttacaaaataaacatagacttaaaaatcttaccg |
351 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52268863 |
caagagaagatctatttaagtaaaatttcacaattggataaaaaaa-gcactaaaacttttgaagtttacaaaataaacatagacttaaaaatcttaccc |
52268961 |
T |
|
| Q |
352 |
aagtccag-tcagatgatgatccttcttcaatattactgttg-cagcttcacctggacgcttcattactgattccatatctttgagaaattgatccgcat |
449 |
Q |
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| T |
52268962 |
aagtccaggtcagatgatgatccttcttcaatattactgttgtcagcttcacctggacgcttcattactgattccatatctttgagaaattgatccgcat |
52269061 |
T |
|
| Q |
450 |
caaagttcacttccttattccttcacaagtcccaatataaatagatatcatcgtaatgaagtaatatagcaaaaccacaaaggcaacgttagaaaactgg |
549 |
Q |
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| T |
52269062 |
caaagttcacttccttattccttcacaagtcccaatataaatagatatcatcgtaatgaagtaatatagcaaaaccacaaaggcaacgttagaaaactgg |
52269161 |
T |
|
| Q |
550 |
taatttggtttggatagaaaatgaagatttgattgaattttcaatatgaaaatgaaataaattattcccactgttgttgggtgaacaaaggaggaagaaa |
649 |
Q |
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|||||||||||||||||||||| ||||||||||||||| |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52269162 |
taatttggtttggatagaaaattaagatttgattgaatcttcaatataaaattgaaataaattattcccactgttgttgggtgaacaaaggaggaagaaa |
52269261 |
T |
|
| Q |
650 |
tccagtgactcgcgacaagaaaat |
673 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
52269262 |
tccagtgactcgcgacaagaaaat |
52269285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 192 - 239
Target Start/End: Original strand, 52268682 - 52268729
Alignment:
| Q |
192 |
gtaacacagctcttccacaaataaatcattagcaaaaataaagacaag |
239 |
Q |
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| T |
52268682 |
gtaacacagctcttccacaaataaatcattagcaaaaataaagacaag |
52268729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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