View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1507_low_14 (Length: 493)
Name: NF1507_low_14
Description: NF1507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1507_low_14 |
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| [»] scaffold0318 (1 HSPs) |
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Alignment Details
Target: scaffold0318 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: scaffold0318
Description:
Target: scaffold0318; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 37 - 476
Target Start/End: Original strand, 10917 - 11355
Alignment:
| Q |
37 |
aaaattatcaacaggtataccattagatctcaactgggtttgcaatgttttattatcaacgatgattgcacaaaccttaaattattgaatttgctatgga |
136 |
Q |
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| T |
10917 |
aaaattatcaacaggtataccattagatctcaactgggtttgcaatgttttattctcaacgatgattgcataaatctcaaattattgaatttgctatgga |
11016 |
T |
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| Q |
137 |
ccttcagtctctaa----taatgaa-gatttaagaattatttagtcaagtgaattgatgaaggattcatgcagtatatatggaccaatgaagactaactt |
231 |
Q |
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| T |
11017 |
ccttcagcctctaactaataatgaaagattta-gaatcagt-agtcaaaggaattgatgaagaattcatgcagtatatatggaccaatgaagactaactt |
11114 |
T |
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| Q |
232 |
ttacatatgctatatataatggtcactatactcgagcattttacagcttattttcatcatgtacactctcaaattgattattctttttattaaatctcaa |
331 |
Q |
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| T |
11115 |
ttacatatattatatat-atggccactatacttgagcattttacagcttattgtcatc----acactctcaaattcattatccttttaattaaatctcaa |
11209 |
T |
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| Q |
332 |
ttgaattcataatttttggagcaggtaatcttgcaaacaaaacgaacaaatcaataggaacaaaataattgctttataaact-----atgaaaagggtgg |
426 |
Q |
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| T |
11210 |
tcgaattcataatttttgg---aggtaat-taccaaacaaaacgaacaaatcaataggaacaaaataattgctttataaactactacatgaaaaaggtgg |
11305 |
T |
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| Q |
427 |
acaaaaaatgatatggcccctcaaacccaataaaatataacagtactttt |
476 |
Q |
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| T |
11306 |
acaaaaaatgatatggcccctcaaacccaatgaaatataacagtactttt |
11355 |
T |
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