View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1507_low_15 (Length: 481)
Name: NF1507_low_15
Description: NF1507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1507_low_15 |
 | |
|
| [»] scaffold0182 (2 HSPs) |
| | |
|
| [»] scaffold0713 (2 HSPs) |
| | |
|
Alignment Details
Target: scaffold0182 (Bit Score: 327; Significance: 0; HSPs: 2)
Name: scaffold0182
Description:
Target: scaffold0182; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 16 - 424
Target Start/End: Complemental strand, 11543 - 11129
Alignment:
| Q |
16 |
tcaccaatgaccccctttctaacttttattcttgatcattcttctactttgcttatgtgtcacttcctcaatccattatacatcataattttgataaaaa |
115 |
Q |
| |
|
||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
11543 |
tcaccaatgaccctctttttaacttttattcttgatcattcttctactttgcttatgtgtcacttcctcaatccattatacatcatagttttgataaaaa |
11444 |
T |
|
| Q |
116 |
------gagttacaataatcaattgcaatcttaataagaaagaacattattatttttaataggaatatacacatcaatattaactaaatgtaactgaaca |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||| |
|
|
| T |
11443 |
taaaaagagttacaataatcaattgcaatcttaataagaaagaacattattatttttaataggaatatacacattaatgttaaccaaatgtaactgaaca |
11344 |
T |
|
| Q |
210 |
ttattattttaattnnnnnnnnnnncagaacttttacatccttcattcttataaccccttcaactactattttttaaaaacattgattatttgttataat |
309 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11343 |
ttattattttaattaaaaaaaaaaacagaacttttacatccttcattcttataaccccttcaactactattttttaaaaacattgattatttgttataat |
11244 |
T |
|
| Q |
310 |
atttacaccatcatcattgaatttgtctgtttacattcttccacataaaggttaaaaagatgctacattttagctcatccatatttccctttttcccttt |
409 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11243 |
atttacaccatcaccattgaatttgtctgtttacattcttccacataaaggttaaaaagatgttacattttagctcatccatatttccctttttcccttt |
11144 |
T |
|
| Q |
410 |
cacctatatgataac |
424 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
11143 |
cacctatatgataac |
11129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0182; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 435 - 472
Target Start/End: Complemental strand, 11106 - 11069
Alignment:
| Q |
435 |
ctcattccttttctgctcattctgtaatatttgatgat |
472 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11106 |
ctcattccttttctgctcattctgtaatatttgatgat |
11069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 16 - 472
Target Start/End: Original strand, 16855964 - 16856413
Alignment:
| Q |
16 |
tcaccaatgaccccctttctaacttttattcttgatcattcttctactttgcttatgtgtcacttcctcaatccattatacatcataattttgataaaaa |
115 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |||| ||||||||||| |||||||||||||||| |
|
|
| T |
16855964 |
tcaccaatgatcccctttctaacttttattcttgatcattctactactttgcttatgtgtcactccttcaaaccattatacataataattttgataaaaa |
16856063 |
T |
|
| Q |
116 |
gagttacaataatcaattgcaatcttaataagaaagaacattattatttttaataggaatatacacatcaatattaactaaatgtaactgaacattatta |
215 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||| || || ||||||||||||||||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
16856064 |
gagttacactaatcaattgcaatcttaataagaaagaag-----taattg-aataggaatatacacatcaatgttaaccaaatgtaactgaacattatta |
16856157 |
T |
|
| Q |
216 |
ttttaattnnnnnnnnnnncagaacttttacatccttcattcttataaccccttcaactactattttttaaaaacattgattatttgttataatatttac |
315 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16856158 |
ttttaattaaaaaaaaaa-cagaacttttacatccttcattcttataaccccttcaactactattttttaaaaacattgattatttgttataatatttac |
16856256 |
T |
|
| Q |
316 |
accatcatcattgaatttgtctgtttacattcttccacataaaggttaaaaagatgctacattttagctcatccatatttccctttttccctttcaccta |
415 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
16856257 |
accatcgccattgaatttgtctgtttacattcttccacataaaggttaaaaagatgttacattttagctcatccatatttctctttttccctttcaccta |
16856356 |
T |
|
| Q |
416 |
tatgataaccaacgcaaatctcattccttttctgctcattctgtaatatttgatgat |
472 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |
|
|
| T |
16856357 |
tatgataaccaacgcaaatctcattccttttctgctcattctgtagtatttgttgat |
16856413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 16 - 446
Target Start/End: Complemental strand, 47933940 - 47933517
Alignment:
| Q |
16 |
tcaccaatgaccccctttctaacttttattcttgatcattcttctactttgcttatgtgtcacttcctcaatccattatacatcataattttgataaaaa |
115 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||||||||||||| ||||||||||||||||||||| | |||| ||||||||||| |||||||||||||||| |
|
|
| T |
47933940 |
tcaccaatgatcccctttctaaattttattcttgatcattctactactttgcttatgtgtcactccttcaaaccattatacataataattttgataaaaa |
47933841 |
T |
|
| Q |
116 |
gagttacaataatcaattgcaatcttaataagaaagaacattattatttttaataggaatatacacatcaatattaactaaatgtaactgaacattatta |
215 |
Q |
| |
|
|||||| | ||||||||||||||||||||||||||||| || || ||||||||||| ||||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
47933840 |
gagttatactaatcaattgcaatcttaataagaaagaag-----taattg-aataggaatatgcacatcaatgttaaccaaatgtaactgaacattatta |
47933747 |
T |
|
| Q |
216 |
ttttaattnnnnnnnnnnncagaacttttacatccttcattcttataaccccttcaactactattttttaaaaacattgattatttgttataatatttac |
315 |
Q |
| |
|
|||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
47933746 |
ttttaattaaaaaaaaaaacagaacttttacatccttcgttcttataaccccttcaactactattttttaaaaacattgattatttgtt-taatatttac |
47933648 |
T |
|
| Q |
316 |
accatcatcattgaatttgtctgtttacattcttccacataaaggttaaaaagatgctacattttagctcatccatatttccctttttccctttcaccta |
415 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
47933647 |
accatcaccattgaatttgtctgtttacattcttccacataaaggttaaaaagatgttacattttaactcatccatatttccctttttccctttcaccta |
47933548 |
T |
|
| Q |
416 |
tatgataaccaacgcaaatctcattcctttt |
446 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
47933547 |
tatgataaccaacgcaaatctcattcctttt |
47933517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 286; Significance: 1e-160; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 16 - 446
Target Start/End: Complemental strand, 54946742 - 54946319
Alignment:
| Q |
16 |
tcaccaatgaccccctttctaacttttattcttgatcattcttctactttgcttatgtgtcacttcctcaatccattatacatcataattttgataaaaa |
115 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||||||||||||| ||||||||||||||||||||| | |||| ||||||||||| |||||||||||||||| |
|
|
| T |
54946742 |
tcaccaatgatcccctttctaaattttattcttgatcattctactactttgcttatgtgtcactccttcaaaccattatacataataattttgataaaaa |
54946643 |
T |
|
| Q |
116 |
gagttacaataatcaattgcaatcttaataagaaagaacattattatttttaataggaatatacacatcaatattaactaaatgtaactgaacattatta |
215 |
Q |
| |
|
|||||| | ||||||||||||||||||||||||||||| || || ||||||||||| ||||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
54946642 |
gagttatactaatcaattgcaatcttaataagaaagaag-----taattg-aataggaatatgcacatcaatgttaaccaaatgtaactgaacattatta |
54946549 |
T |
|
| Q |
216 |
ttttaattnnnnnnnnnnncagaacttttacatccttcattcttataaccccttcaactactattttttaaaaacattgattatttgttataatatttac |
315 |
Q |
| |
|
|||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
54946548 |
ttttaattaaaaaaaaaaacagaacttttacatccttcgttcttataaccccttcaactactattttttaaaaacattgattatttgtt-taatatttac |
54946450 |
T |
|
| Q |
316 |
accatcatcattgaatttgtctgtttacattcttccacataaaggttaaaaagatgctacattttagctcatccatatttccctttttccctttcaccta |
415 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
54946449 |
accatcaccattgaatttgtctgtttacattcttccacataaaggttaaaaagatgttacattttaactcatccatatttccctttttccctttcaccta |
54946350 |
T |
|
| Q |
416 |
tatgataaccaacgcaaatctcattcctttt |
446 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
54946349 |
tatgataaccaacgcaaatctcattcctttt |
54946319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 236 - 472
Target Start/End: Complemental strand, 5885520 - 5885284
Alignment:
| Q |
236 |
agaacttttacatccttcattcttataaccccttcaactactattttttaaaaacattgattatttgttataatatttacaccatcatcattgaatttgt |
335 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
5885520 |
agaacttttacatccttcattcttataaccccttcaactactattttttaaaaacattgattatttgttataatatttacaccatctccattgaatttgt |
5885421 |
T |
|
| Q |
336 |
ctgtttacattcttccacataaaggttaaaaagatgctacattttagctcatccatatttccctttttccctttcacctatatgataaccaacgcaaatc |
435 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5885420 |
ctgtttacattcttccacataaaggttaaaaagatgttacattttagctcatccatatttccctttttccctttcacctatatgataaccaacgcaaatc |
5885321 |
T |
|
| Q |
436 |
tcattccttttctgctcattctgtaatatttgatgat |
472 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5885320 |
tcattccttttctgctcattctgtaatatttgatgat |
5885284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 16 - 154
Target Start/End: Complemental strand, 5885651 - 5885516
Alignment:
| Q |
16 |
tcaccaatgaccccctttctaacttttattcttgatcattcttctactttgcttatgtgtcacttcctcaatccattatacatcataattttgataaaaa |
115 |
Q |
| |
|
|||||||||| || |||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||| |||||||||||||||| |
|
|
| T |
5885651 |
tcaccaatgatcctctttctaacttttattcttgatcattctactactttgcttatgtgtcacttc---aagccattatacataataattttgataaaaa |
5885555 |
T |
|
| Q |
116 |
gagttacaataatcaattgcaatcttaataagaaagaac |
154 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
5885554 |
gagttacactaatcaattgcaatcttaataagaaagaac |
5885516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 238 - 472
Target Start/End: Original strand, 43942417 - 43942653
Alignment:
| Q |
238 |
aacttttacatccttcattcttataaccccttcaactactattttttaaaaacattgattatttgttata--atatttacaccatcatcattgaatttgt |
335 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |
|
|
| T |
43942417 |
aacttttacatccttcattcttataactccttcaactactattttttaaaaacattgattatttgttatataatatttacaccatcaccattgaatttgt |
43942516 |
T |
|
| Q |
336 |
ctgtttacattcttccacataaaggttaaaaagatgctacattttagctcatccatatttccctttttccctttcacctatatgataaccaacgcaaatc |
435 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
43942517 |
ctgtttacattcttccatataaaggttaaaaagatgttacattttagatcatccatatttccctttttccctttcacctacatgataaccaacgcaaatc |
43942616 |
T |
|
| Q |
436 |
tcattccttttctgctcattctgtaatatttgatgat |
472 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43942617 |
tcattccttttctgctcattctgtaatatttgatgat |
43942653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 16 - 223
Target Start/End: Original strand, 43942171 - 43942372
Alignment:
| Q |
16 |
tcaccaatgaccccctttctaacttttattcttgatcattcttctactttgcttatgtgtcacttcctcaatccattatacatcataattttgataaaaa |
115 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |||||| ||||||||||| |||||||||||||||| |
|
|
| T |
43942171 |
tcaccaatgatcccctttctaatttttattcttgatcattcttctactctgcttatgtgtcactccctcaaaccattatacataataattttgataaaaa |
43942270 |
T |
|
| Q |
116 |
gagttacaataatcaattgcaatcttaataagaaagaacattattatttttaataggaatatacacatcaatattaactaaatgtaactgaacattatta |
215 |
Q |
| |
|
|||||||| ||||||||||||| |||||||||||||||| || || ||||||||||||||||||||| ||||| || |||||||||||||||||| |
|
|
| T |
43942271 |
gagttacactaatcaattgcaaccttaataagaaagaac--ta----attgaataggaatatacacatcaatgttaaccaagtgtaactgaacattatta |
43942364 |
T |
|
| Q |
216 |
ttttaatt |
223 |
Q |
| |
|
|||||||| |
|
|
| T |
43942365 |
ttttaatt |
43942372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 304 - 472
Target Start/End: Complemental strand, 2501361 - 2501194
Alignment:
| Q |
304 |
tataatatttacaccatcatcattgaatttgtctgtttacattcttccacataaaggttaaaaagatgctacattttagctcatccatatttcccttttt |
403 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| ||||||||||| |||||||||| ||||| |||| ||||||| |
|
|
| T |
2501361 |
tataatatttacaccatcatcattgaatgtgtctgtttacattctttcacataaagcttaaaaagatgttacattttagatcatcttaattttccttttt |
2501262 |
T |
|
| Q |
404 |
ccctttcacctatatgataaccaacgcaaatctcattccttttctgctcattctgtaatatttgatgat |
472 |
Q |
| |
|
||||||||||||||| |||| | || | |||||||||||||||||||||||||||||| |||| ||||| |
|
|
| T |
2501261 |
ccctttcacctatataataatc-acactaatctcattccttttctgctcattctgtaacatttcatgat |
2501194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 50 - 135
Target Start/End: Complemental strand, 2501804 - 2501722
Alignment:
| Q |
50 |
atcattcttctactttgcttatgtgtcacttcctcaatccattatacatcataattttgataaaaagagttacaataatcaattgc |
135 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||| |||||||| ||||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
2501804 |
atcattcttctactttgcttatgtgtcactccctcaaaccattata---cataattttgataaaaagagttacactaatctattgc |
2501722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0713 (Bit Score: 107; Significance: 2e-53; HSPs: 2)
Name: scaffold0713
Description:
Target: scaffold0713; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 16 - 154
Target Start/End: Original strand, 7408 - 7546
Alignment:
| Q |
16 |
tcaccaatgaccccctttctaacttttattcttgatcattcttctactttgcttatgtgtcacttcctcaatccattatacatcataattttgataaaaa |
115 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |||| ||||||||||| ||| |||||||||||| |
|
|
| T |
7408 |
tcaccaatgatcccctttctaacttttattcttgatcattctactactttgcttatgtgtcactccttcaagccattatacataatacttttgataaaaa |
7507 |
T |
|
| Q |
116 |
gagttacaataatcaattgcaatcttaataagaaagaac |
154 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
7508 |
gagttacactaatcaattgcaatcttaataagaaagaac |
7546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0713; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 236 - 304
Target Start/End: Original strand, 7542 - 7610
Alignment:
| Q |
236 |
agaacttttacatccttcattcttataaccccttcaactactattttttaaaaacattgattatttgtt |
304 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7542 |
agaacttttacatccttcattcttataaccccttcaactactattttttaaaaacattgattatttgtt |
7610 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 401 - 473
Target Start/End: Complemental strand, 26231004 - 26230932
Alignment:
| Q |
401 |
tttccctttcacctatatgataaccaacgcaaatctcattccttttctgctcattctgtaatatttgatgatg |
473 |
Q |
| |
|
|||||||||||||||||| ||||||||| | ||||||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
26231004 |
tttccctttcacctatataataaccaacactaatctcattccttttatgatcattctgtaatatttgatgatg |
26230932 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 304 - 387
Target Start/End: Complemental strand, 26231132 - 26231049
Alignment:
| Q |
304 |
tataatatttacaccatcatcattgaatttgtctgtttacattcttccacataaaggttaaaaagatgctacattttagctcat |
387 |
Q |
| |
|
|||| |||||||||||||||||||| || ||| ||||||||||||||||||||||| ||||| ||||| |||||||||| |||| |
|
|
| T |
26231132 |
tatattatttacaccatcatcattggatgtgtatgtttacattcttccacataaagcttaaagagatgttacattttagatcat |
26231049 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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