View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1507_low_16 (Length: 472)
Name: NF1507_low_16
Description: NF1507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1507_low_16 |
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| [»] scaffold0054 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 392; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 20 - 465
Target Start/End: Original strand, 9052767 - 9053209
Alignment:
| Q |
20 |
caccttatcaaaaatttatagttaatcctcttgggtttggttatgatatagttagagatgattataagtttattaggtgtgcaggttattctaacttaga |
119 |
Q |
| |
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||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| ||||||||| |
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| T |
9052767 |
caccttatcaaaagtttgtagttaatcctcttgggtttggttatgatatagttagagatgattataagttgattaggtgtgtaggttattttaacttaga |
9052866 |
T |
|
| Q |
120 |
atacgaagagtgtgaagaacttggtatttcatggagtgatgcaccatggaaagatttatcttatgaatacttatgggagatatatagccttaaaagtaac |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9052867 |
atacgaagagtgtgaagaacttggtatttcatggagtgatgcgccatggaaagatttatcttatgaatacttatgggagatatatagccttaaaagtaac |
9052966 |
T |
|
| Q |
220 |
acttggagaaaacttgatgttaattactctgcttgttcatgcttttctaacatcgctggtgtacgactatacacgaatgaaatgtgtcattggtggcaat |
319 |
Q |
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|||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9052967 |
acttggagaaaacttgatgttaatgactctgcttgttcatgtttttctaacatcgctggtgtacgactatacacgaatgaaatgtgtcattggtggcaat |
9053066 |
T |
|
| Q |
320 |
atggtaaaaagtatgatggagtagaggtggaatcatttgacttgagaaatgaggtgttgtttacaacacttgtacccttaggcgatgatgtatattctaa |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| |
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| T |
9053067 |
atggtaaaaagtatgatggagtagaggtggaatcatttgacttgagaaatgaggtgttctttacaacacttgtacccttaggc---gatgtatattctaa |
9053163 |
T |
|
| Q |
420 |
gtcgttatacatggtggggttaaatggcttcattgccttcatctca |
465 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
9053164 |
gtcgttatacatggtggggttaaatggctccattgccttcatctca |
9053209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 193 - 243
Target Start/End: Original strand, 37512601 - 37512651
Alignment:
| Q |
193 |
tgggagatatatagccttaaaagtaacacttggagaaaacttgatgttaat |
243 |
Q |
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||||| ||||||||||| | ||| ||| ||||||||||||||||||||||| |
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|
| T |
37512601 |
tgggatatatatagcctaagaagcaactcttggagaaaacttgatgttaat |
37512651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 193 - 237
Target Start/End: Complemental strand, 27173805 - 27173761
Alignment:
| Q |
193 |
tgggagatatatagccttaaaagtaacacttggagaaaacttgat |
237 |
Q |
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||||||||||| ||||| ||||||||| ||||||| ||||||||| |
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| T |
27173805 |
tgggagatatacagcctaaaaagtaactcttggaggaaacttgat |
27173761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 193 - 237
Target Start/End: Complemental strand, 42629988 - 42629944
Alignment:
| Q |
193 |
tgggagatatatagccttaaaagtaacacttggagaaaacttgat |
237 |
Q |
| |
|
|||||||||||| | |||||||| ||| ||||||||||||||||| |
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|
| T |
42629988 |
tgggagatatattgtcttaaaagcaactcttggagaaaacttgat |
42629944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0054 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0054
Description:
Target: scaffold0054; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 190 - 237
Target Start/End: Complemental strand, 40187 - 40140
Alignment:
| Q |
190 |
ttatgggagatatatagccttaaaagtaacacttggagaaaacttgat |
237 |
Q |
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|||||||||||||||||||| | ||||||| | ||||||||||||||| |
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| T |
40187 |
ttatgggagatatatagcctaagaagtaactcgtggagaaaacttgat |
40140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 189 - 240
Target Start/End: Complemental strand, 32745254 - 32745203
Alignment:
| Q |
189 |
cttatgggagatatatagccttaaaagtaacacttggagaaaacttgatgtt |
240 |
Q |
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||||||||||||||||||||| | ||||||| | ||||| |||||||||||| |
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| T |
32745254 |
cttatgggagatatatagcctaagaagtaactcctggaggaaacttgatgtt |
32745203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 193 - 237
Target Start/End: Complemental strand, 25319666 - 25319622
Alignment:
| Q |
193 |
tgggagatatatagccttaaaagtaacacttggagaaaacttgat |
237 |
Q |
| |
|
||||||||||||||||| | ||||||| | ||||||||||||||| |
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|
| T |
25319666 |
tgggagatatatagcctaagaagtaactcatggagaaaacttgat |
25319622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 193 - 237
Target Start/End: Complemental strand, 26149359 - 26149315
Alignment:
| Q |
193 |
tgggagatatatagccttaaaagtaacacttggagaaaacttgat |
237 |
Q |
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||||||||||||||||| | ||||||| | ||||||||||||||| |
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| T |
26149359 |
tgggagatatatagcctaagaagtaactcatggagaaaacttgat |
26149315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 51 - 92
Target Start/End: Original strand, 361450 - 361491
Alignment:
| Q |
51 |
tgggtttggttatgatatagttagagatgattataagtttat |
92 |
Q |
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|||||||||||||||| | |||||||||||||||||| |||| |
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| T |
361450 |
tgggtttggttatgattttgttagagatgattataagattat |
361491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 193 - 238
Target Start/End: Complemental strand, 22535551 - 22535506
Alignment:
| Q |
193 |
tgggagatatatagccttaaaagtaacacttggagaaaacttgatg |
238 |
Q |
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||||||||||| ||||||| ||||||| ||||||| |||||||||| |
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| T |
22535551 |
tgggagatatacagccttagaagtaactcttggaggaaacttgatg |
22535506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 193 - 237
Target Start/End: Original strand, 361580 - 361624
Alignment:
| Q |
193 |
tgggagatatatagccttaaaagtaacacttggagaaaacttgat |
237 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||| |
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| T |
361580 |
tgggagatatatagccttaaaagtaatttctggagaaaacttgat |
361624 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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