View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1507_low_17 (Length: 459)
Name: NF1507_low_17
Description: NF1507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1507_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 7 - 441
Target Start/End: Original strand, 42804825 - 42805259
Alignment:
| Q |
7 |
tcgaagaaaatactaatggtaatggcccttctataaggtcccattgcccctatcctacttggtcttccttctactcatagcaagcctccatgaaaggaag |
106 |
Q |
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| T |
42804825 |
tcgaagaaaatactaatggtaatggcccttctataaggtcccattgcccctatcctacttggtcttccttctactcatagcaagcctccatgaaaggaag |
42804924 |
T |
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| Q |
107 |
gtttgacacttactccaaattgaaaaaagcatctcatactcacttttactttccttcacttcaaaatcccatcaaattacattcaannnnnnngtttaca |
206 |
Q |
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| T |
42804925 |
gtttcacacttactccaaattgaaaaaagcatctcatactcacttttactttccttcacttcaaaatcccatcaaattacattcaatttttttgtttaca |
42805024 |
T |
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| Q |
207 |
actttaggtggcatcctgatttcttgccattgtcagcgcatatgcttacgtgggaagggaagcctattaactgaatagcaccttcgtcttgatcaagtag |
306 |
Q |
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| T |
42805025 |
actttaggtggcatcctgatttcttgccattgtcagcgcatatgcttacgtgggaagggaagcctattaactgaatagcaccttcgtcttgatcaagtag |
42805124 |
T |
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| Q |
307 |
gccatgcaggatatatagggagaaaagtcaaattaaactttaatgtagtaataacttgagatactctcgaaagccttatcaaaatgatactatttaatgt |
406 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42805125 |
gccatggaggatatatagggagaaaagtcaaattaaactttaatgtagtaataacttgagatactctcgaaagccttatcaaaatgatactatttaatgt |
42805224 |
T |
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| Q |
407 |
ttatggttctgaagttgacctttgaaccatttgat |
441 |
Q |
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| T |
42805225 |
ttatggttctgaagttgacctttgaaccatttgat |
42805259 |
T |
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