View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1507_low_20 (Length: 430)
Name: NF1507_low_20
Description: NF1507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1507_low_20 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 74 - 413
Target Start/End: Complemental strand, 52003007 - 52002660
Alignment:
| Q |
74 |
ctctaaatataagactcaattatttattagaagaccttttcaaatatttctttgcattattttctgtgacagcagaaacatccttaattatttgataaat |
173 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |||||||||||||||||| |
|
|
| T |
52003007 |
ctctaaatataagactcaattatttattagaagaccttttcaaatatttctttgcattattttctgtgatag---aaacattcttaattatttgataaat |
52002911 |
T |
|
| Q |
174 |
ttgtgtagtcattaattagtttaagaaataaacattgcaacagacaagatcgactatctctgacttgtaaggatcaggatc-----------nnnnnnnn |
262 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52002910 |
ttgtgtagtcattaattagtttaagaaataaacattgcaacagacaagatcgactatctctgacttgtaaggatcaggatcttttttttttttttttttt |
52002811 |
T |
|
| Q |
263 |
nnnctgtttacaataggaatatggatatattatggtgaataaggtggagtgagtaagatatcgagtccaataattaagtaggtaattttagtggtaagaa |
362 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
52002810 |
tttctgtttacaataggaatatggatatattatggtgaacaaggtggagtgaataagatatcgagtccactaattaagtaggtaattttagtggtaagaa |
52002711 |
T |
|
| Q |
363 |
attgaccttatcgttttaaattacaaatttcaaaatgaaggtgttaattcc |
413 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52002710 |
attgaccttatcgttttaaattacaaatttcaaaatgaaggtgttaattcc |
52002660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University