View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1507_low_23 (Length: 417)
Name: NF1507_low_23
Description: NF1507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1507_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 378; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 18 - 415
Target Start/End: Original strand, 24362158 - 24362555
Alignment:
| Q |
18 |
agaatgcagtagaaatagactatgatgaaaatgttgatcatagtgatgatgaatcatgtcaaattttggatgaatggccaaatcagaagactggaaggag |
117 |
Q |
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| T |
24362158 |
agaatgcagtagaaatagactatgatgaaaatgttgatcatagtgatgatgaatcatgtcaaattttggatgaatggccaaatcaaaagactggaaggag |
24362257 |
T |
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| Q |
118 |
gccaccattagattcccctcgacaacgtaagaaagttagaggtatggctttcattttctgtttcttctttcattatattaacattcaatttcatggtgcc |
217 |
Q |
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| T |
24362258 |
gccaccattagattcccctcgaccacgtaagaaagttagaggtatggctttcattttctgtttcttctttcattatattaacattcaatttcatggtgcc |
24362357 |
T |
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| Q |
218 |
aaacatttcatcttacttagttacttgatgttgtttaataaaagctagacttgaaattgaaaacaccaagtattatatgaggttcaaattctgaacatgc |
317 |
Q |
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| T |
24362358 |
aaacatttcatcttacttagttacttgatgttttttaataaacgctagacttgaaattgaaaacaccaagtattatatgaggttcaaattctgaacatgc |
24362457 |
T |
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| Q |
318 |
tcctctgcgagtttaactatttgttttatatttcacacatatatgcaggtgagattaagaagactactgaaagaactacatcattgaattggcctatg |
415 |
Q |
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| T |
24362458 |
tcctctgagagtttaactatttgttttatatttcacacatatatgcaggtgagattaagaagactactgaaagaactacatcattgaattggcctatg |
24362555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 300 - 406
Target Start/End: Original strand, 24352175 - 24352281
Alignment:
| Q |
300 |
ttcaaattctgaacatgctcctctgcgagtttaactatttgttttatatttcacacatatatgcaggtgagattaagaagactactgaaagaactacatc |
399 |
Q |
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| T |
24352175 |
ttcaaattctgaatatgctcttccaagagtttaattacttgttttattttccacacatatatgcaggtgagaacaagaagagtactaaaagaacttcatc |
24352274 |
T |
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| Q |
400 |
attgaat |
406 |
Q |
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|||||| |
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| T |
24352275 |
cttgaat |
24352281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 337 - 403
Target Start/End: Original strand, 24355615 - 24355681
Alignment:
| Q |
337 |
tttgttttatatttcacacatatatgcaggtgagattaagaagactactgaaagaactacatcattg |
403 |
Q |
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| T |
24355615 |
tttgttttatattccacacatatatgcaggtgagattaagaaaactgctaaaagaacttcatcattg |
24355681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 339 - 411
Target Start/End: Original strand, 24370034 - 24370106
Alignment:
| Q |
339 |
tgttttatatttcacacatatatgcaggtgagattaagaagactactgaaagaactacatcattgaattggcc |
411 |
Q |
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| T |
24370034 |
tgttttacatttcacacatatatgcaggtgatgatgagaagactactaaaagaacttcatcaatgaattggcc |
24370106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 42 - 107
Target Start/End: Original strand, 24344581 - 24344646
Alignment:
| Q |
42 |
atgaaaatgttgatcatagtgatgatgaatcatgtcaaattttggatgaatggccaaatcagaaga |
107 |
Q |
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|||| ||||||| ||||||||||||||||||| | | ||||| |||||||||||||||||||||| |
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| T |
24344581 |
atgacaatgttggtcatagtgatgatgaatcagttgagattttagatgaatggccaaatcagaaga |
24344646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 351 - 411
Target Start/End: Original strand, 24346522 - 24346582
Alignment:
| Q |
351 |
cacacatatatgcaggtgagattaagaagactactgaaagaactacatcattgaattggcc |
411 |
Q |
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|||| |||||||||| |||| ||| |||||||| ||||||||||||||||| ||||||||| |
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| T |
24346522 |
cacaaatatatgcagctgaggttatgaagactagtgaaagaactacatcatggaattggcc |
24346582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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